Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32516
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    29   0.34 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   1.0  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   2.4  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   2.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   3.1  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   4.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   7.3  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    24   9.6  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   9.6  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    24   9.6  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   9.6  

>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 237 VLQQLNAFXKSLQGALGDANGKAKEALEQSRQNIXRTAEELRKAHPD---VEKNATALRE 407
           +L   N + + L   + +A  KA+++LEQ+        E L K H +    E+   + +E
Sbjct: 38  LLNNKNEYLRQLS-EINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQE 96

Query: 408 KLQAAVQNTVQESXEV 455
           KL A ++   + S E+
Sbjct: 97  KLDAMLKRKQKLSEEL 112


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 330 ASTVPKPPWPCRSRLRALPG 271
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 267 SLQGALGDANGKAKEALEQSRQNIX-----RTAEELRKAHPDVEKNATALREKLQAA 422
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 198 QDFIKAWKDGSXSVLQQLNAFXKSLQGALGD-ANGKAKEALEQSR-QNIXRTAE 353
           +D   A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN+    E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 294 NGKAKEALEQSRQNIXRTAEELRKAHPDVEKN 389
           N K KE  E++     +  EELR+A PD E++
Sbjct: 22  NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 357 LRKAHPDVEKNATALREKLQAAVQNTVQE 443
           L  AH D+E   T++RE+L++ +    +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 347 RALDVLPRLFQSLLGLAVRVSERSLETLXEGVELLQHG 234
           RAL V+  L +S+LGL V  +  SL  L   + + + G
Sbjct: 608 RALGVIFNLNESILGLTVFAAGNSLSDLIADIMIARSG 645


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 336 CSASTVPKPPWPCRSRLRALPGDS 265
           C  +T+PKPP+   + L  LP  S
Sbjct: 290 CPHTTIPKPPYQSDTDLTELPTKS 313


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 91  APSLPWARAMQAKRTTN----LAAMMYCRE 14
           +PS PWA  + +K   N     AA+  CRE
Sbjct: 92  SPSCPWAYILSSKNNPNQNPQAAALTKCRE 121


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 106 RERRVAPSLPWARAMQAKRTTNLAAMMYCRETEC 5
           R+  V     WA  + A    N+  + +C  TEC
Sbjct: 616 RDAHVVKVKEWADFVPALNKKNIVMIPWCNTTEC 649


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 409 FSRRAVAFFSTSGWALRSSSAVRXMF 332
           FSR  V FFS    AL+S S +  MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 285 GDANGKAKEALEQSRQNIXRTAEE 356
           G  NG+AKE  E+ R    +T E+
Sbjct: 473 GKGNGRAKETPEEKRARKKKTKED 496


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 219 KDGSXSVLQQLNAFXKSLQGALGDANGKAKEALEQSRQNIXRTAEE 356
           KDG+ +   +LN F K L  +    + +A +   +    I +++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +3

Query: 255 AFXKSLQGALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQAAVQ 428
           A  K L GA      KAKE  ++ R    RTA E+RK    +E+     R +  A  Q
Sbjct: 152 AHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQ 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,195
Number of Sequences: 5004
Number of extensions: 13567
Number of successful extensions: 72
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)