Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32516
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0180 + 2034021-2034023,2034741-2035088 32 0.19
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 31 0.33
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 29 1.8
02_04_0315 - 21969416-21970756 29 1.8
01_06_1290 - 36023353-36024096 29 1.8
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 5.4
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 27 5.4
01_01_0473 - 3478660-3480338,3480507-3480609 27 5.4
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 27 7.2
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 27 7.2
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 27 7.2
02_01_0233 - 1558740-1559048 27 7.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 9.5
02_05_0589 - 30176354-30176829,30176895-30177075 27 9.5
02_01_0060 - 434731-435879 27 9.5
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 32.3 bits (70), Expect = 0.19
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 222 DGSXSVLQQLNAFXKSLQGALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATAL 401
D ++ LN L + + N EALE+ QN+ R EE +K H +++K L
Sbjct: 24 DAHKDQVKGLNGRISKLNDTIKELNDTI-EALERQVQNLTRYKEEKQKQHANLQKEFAEL 82
Query: 402 REK---LQAAVQN 431
K L AA +N
Sbjct: 83 ERKYRDLDAAHRN 95
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 31.5 bits (68), Expect = 0.33
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 279 ALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQAA--VQNTVQESXE 452
A+ DA G+ ++A+E + E+L A+PDVE L E L+ A +N Q+S E
Sbjct: 515 AIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSLE 574
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 288 DANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQAA 422
DA G+ EA+E + E+L A+PDV+ L E L+ A
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEA 681
>02_04_0315 - 21969416-21970756
Length = 446
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 207 IKAWKDGSXSVLQQLNAFXKSLQGALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEK 386
++A +D + + Q+ N L + D NG + ALE++ + + E L A + K
Sbjct: 220 VRAAEDEAHAAGQE-NVELAELHRVVDDENGSLRRALERAVEEVNAANESLELATGENSK 278
Query: 387 NATALREKLQAAVQNTVQES 446
A+ EK ++A++ QE+
Sbjct: 279 LQDAVAEK-ESAMEALRQEN 297
>01_06_1290 - 36023353-36024096
Length = 247
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 127 FXVPXXSRERRVAPSLPWARAMQAKR-TTNLAAMMYCRETECG 2
F +P S AP+ PW+ + A+ T A ++C +CG
Sbjct: 57 FFLPALSHRSFAAPAHPWSGRIWARTGCTGAGAQLHCATGDCG 99
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 222 DGSXSVLQQLNAFXKSLQGALGDANG---KAKEALEQSRQNIXRTAEELRKAHPDVEKNA 392
DG ++ LN AL ++ K + +Q ++ + E++R AH D+ KN+
Sbjct: 764 DGQAKAMEGLNHLYSFQAQALQESRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKNS 823
Query: 393 TALRE 407
++ E
Sbjct: 824 ESILE 828
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 258 FXKSLQGALG--DANGKAKEALEQSRQNIXRTAEELRKAHPDV 380
F KSL G + D +GKAK+ + + + +EE++ + DV
Sbjct: 184 FEKSLVGQINIEDMSGKAKDVINEEGSSEDGNSEEMKDSDDDV 226
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 27.5 bits (58), Expect = 5.4
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +3
Query: 129 TTPRXSIRLXXQQFNSLTKSKDAQDFIKAWKDGSXSVLQQLNAFXKSLQGALGDANGKA- 305
TTP+ + F+ S + D K DGS S + ++ L+ GD + A
Sbjct: 130 TTPKQKRKPRAAGFDVFLGSGGSSDISKKGSDGSSSSSSESDSEVDELREDNGDGSPFAL 189
Query: 306 KEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 443
E + + + E+L EKN EKL+ ++++ E
Sbjct: 190 NERIAELEDELQEAREKLEALE---EKNTRCQCEKLEEKLKDSHSE 232
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 GDANGKAKEALEQSRQNIXRTAEEL-RKAHPDVE-KNATALREKLQAA-VQNTVQESXEV 455
GD++G AKE L S +++ + E+ RK +E K LR + Q +Q+ ++ + +V
Sbjct: 120 GDSDGDAKEGLRDSSRSMVQMQREVQRKLQEQIEVKRHLQLRMEAQGRYLQSVLRRAQQV 179
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 276 GALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQ 416
G GD G+ + A+ +R A LR+A ++ A ALR +++
Sbjct: 44 GEKGDGEGEGEGAVVLARVEAEEEAAALREAVAAAQETAAALRSEVE 90
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +3
Query: 276 GALGDANGKAKEALEQSRQNIXRTAEELRKAHPDVEKNATALREKLQAAVQNT 434
GA G A A SR ++ R +L H D ++K + +NT
Sbjct: 140 GAAVGGGGAAVSARPASRASVRRNVSDLAAEHSDANDGIPVRKDKANWSARNT 192
>02_01_0233 - 1558740-1559048
Length = 102
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 348 AEELRKAHPDVEKNATALREKLQAAVQ--NTVQESXE 452
AEELR+ + ++E+ ALR ++ AA + T +E+ E
Sbjct: 23 AEELRRRNAELEREVAALRAEVAAARRRAETAEEAEE 59
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 282 LGDANGKAKEALEQSRQNIXRTAEELRKAHP-DVEKNATALREKLQAAVQNTVQESXE 452
+G + +A+EAL R N A + +HP + + L + L ++ NT + S E
Sbjct: 1216 MGFSRARAEEALRSVRTNSVEMATDWLFSHPEEFVQEDVQLAQALALSLGNTTEASKE 1273
>02_05_0589 - 30176354-30176829,30176895-30177075
Length = 218
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 366 PCGAPRPCAXCSASTVPKPPWPCRSRLRALPGDS 265
P GAPRP A +A T P P R R P S
Sbjct: 150 PIGAPRPAAVTAAFT-PTSPSASRPSARTSPSPS 182
>02_01_0060 - 434731-435879
Length = 382
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 126 NTTPRXSIRLXXQQFNSLTKSKDAQDFIKAWKDG 227
++TPR + L + L S DAQ ++ W DG
Sbjct: 251 SSTPRLGLYLCSCDLSYLCCSYDAQVMVRCWLDG 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,339
Number of Sequences: 37544
Number of extensions: 117699
Number of successful extensions: 573
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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