Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32513
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 211 3e-56
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 210 6e-56
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 210 9e-56
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 6.1
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 6.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 6.1
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 8.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 24 8.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 8.1
SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu... 24 8.1
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 211 bits (516), Expect = 3e-56
Identities = 94/129 (72%), Positives = 106/129 (82%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
P H +LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR T EEAKYKLCKVKRV G
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 387 NVPYLVTHD 413
VP+LVTHD
Sbjct: 135 GVPFLVTHD 143
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 210 bits (513), Expect = 6e-56
Identities = 93/129 (72%), Positives = 106/129 (82%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
P H +LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HR T EEAKYKLCKVKRV G
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 387 NVPYLVTHD 413
VP+LVTHD
Sbjct: 135 GVPFLVTHD 143
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 210 bits (512), Expect = 9e-56
Identities = 93/129 (72%), Positives = 106/129 (82%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
P H +LDKL G YAP+PS GPHK RECLPL++FL NRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR T EEAKYKLCKVKRV G
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 387 NVPYLVTHD 413
VP+LVTHD
Sbjct: 135 GVPFLVTHD 143
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 232 G*VGSVLTFPSTFMRRCFTIFR 167
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 114 LVIFLXNRLKYALTGNEVLKIV 179
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -3
Query: 227 SRVSPNFPINLYEALFHNFQDFVSGQSIL 141
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 117 VIFLXNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 233
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.2 bits (50), Expect = 8.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 239 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIXQENHQGQALAQLVGT 84
SS+ + P+ P++ +E F NFQ S L I ++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.2 bits (50), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 87 PHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG--KVRTD 221
P +CL + F+ + LT E ++KQ KV G VRTD
Sbjct: 234 PEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTD 280
>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex
subunit 10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 85
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 2 SIWKRLNAPKAWD 40
S+WKR NA WD
Sbjct: 56 SVWKRANAGLTWD 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,189
Number of Sequences: 5004
Number of extensions: 33424
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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