Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32513
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 186 6e-48
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 184 3e-47
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 184 3e-47
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 29 1.5
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 4.5
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 27 4.5
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 4.5
04_04_0950 + 29609484-29611025 27 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 5.9
01_01_1127 + 8930593-8932681,8932812-8933401 27 5.9
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 7.8
03_06_0588 - 34924061-34924644,34924662-34925058 27 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 186 bits (453), Expect = 6e-48
Identities = 84/129 (65%), Positives = 100/129 (77%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
P H MLDKLGG +AP+PS+GPHK RECLPL++ L NRLKYALT EV+ I+ QR + VDG
Sbjct: 31 PSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDG 90
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H E+AK+KLCKV+ V G
Sbjct: 91 KVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQK 150
Query: 387 NVPYLVTHD 413
+P+L T+D
Sbjct: 151 GIPFLNTND 159
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 184 bits (447), Expect = 3e-47
Identities = 82/129 (63%), Positives = 100/129 (77%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
PKH MLDKLGG +AP+PS+GPHK RECLPL++ + NRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + E+AK+KLCKV+ V G
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 387 NVPYLVTHD 413
+PYL T+D
Sbjct: 135 GIPYLNTYD 143
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 184 bits (447), Expect = 3e-47
Identities = 82/129 (63%), Positives = 100/129 (77%)
Frame = +3
Query: 27 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
PKH MLDKLGG +AP+PS+GPHK RECLPL++ + NRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + E+AK+KLCKV+ V G
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 387 NVPYLVTHD 413
+PYL T+D
Sbjct: 135 GIPYLNTYD 143
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 129 SGKSPGASTRATCGDRLTVSVH 64
+G+SPG + RA GD L V+VH
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVH 71
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 174 FSGLRFRSKHTSDDSSGKSPGASTRATCG 88
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 81 TGPHKL-RECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 257
TGP+KL R C I + L LTG+ + + +++ G DP G V++
Sbjct: 365 TGPYKLVRRCEVTAILILYGLPRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLA 424
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 248 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 153
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -1
Query: 184 CFTIFRTSFPVKAYFRRFXRKITRGKHSRNLWGPVDGLGAYTP 56
CF +F V RR RK K + L GP G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 279 FRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGP 383
+ LIYD++G + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/80 (17%), Positives = 36/80 (45%)
Frame = +3
Query: 123 FLXNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 302
+L N +T + + +K+ + + ++T+P +P G++ +E+ ++ +
Sbjct: 269 YLTNLKSMKITSDAEISDIKKARLLLKSVIQTNPKHPPGWIAAARLEEVAGKLQVAQQLI 328
Query: 303 GRFTIHRXTPEEAKYKLCKV 362
R T E+ K C++
Sbjct: 329 QRGCEECPTNEDVWLKACRL 348
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 33 HGMLDKLGGVYAPRPSTGPHK 95
HG LD L G AP+P+ HK
Sbjct: 949 HGYLDNLTGGNAPKPTRPQHK 969
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 115 RGKHSRNLWGPVDGLGAYTPPS 50
R H+RNLWG ++G+ P S
Sbjct: 148 RCHHARNLWGAMEGIYQLPPDS 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,050
Number of Sequences: 37544
Number of extensions: 221839
Number of successful extensions: 632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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