Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32513
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   171   2e-43
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    31   0.44 
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    31   0.44 
AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical ...    27   4.1  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   5.4  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   5.4  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   5.4  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    27   7.1  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    26   9.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  171 bits (416), Expect = 2e-43
 Identities = 80/129 (62%), Positives = 95/129 (73%)
 Frame = +3

Query: 27  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXNRLKYALTGNEVLKIVKQRLIKVDG 206
           P H MLDKLGGV+A RP+ GPHKLRE LPL +FL NRLKYAL   E  KI+ QR+++VDG
Sbjct: 14  PSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDG 73

Query: 207 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRXTPEEAKYKLCKVKRVATGPX 386
           KVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HR    EA +KLCKVK V T   
Sbjct: 74  KVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNK 133

Query: 387 NVPYLVTHD 413
            VP L T D
Sbjct: 134 GVPVLTTTD 142


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 91  WGPVDGLGAYTPPSLSNIPCFGS 23
           +GP+ GLG +T P+L  +P FG+
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGN 97


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 91  WGPVDGLGAYTPPSLSNIPCFGS 23
           +GP+ GLG +T P+L  +P FG+
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGN 97


>AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical
           protein Y50D4B.1 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 196 FMRRCFTIFRTSFPVKAYFRRFXRKITRGKH 104
           FMRRC T F   +PV A  +R   +I R K+
Sbjct: 155 FMRRCLTRFPVHYPVPA--KRIPMEINRQKN 183


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 35  WDVGQTWRCVCTETVNRSPQVARVLAPGDFPXESSE-VCFDRKRSPENC 178
           W +G +  C C    N  P++   +    F  E  E  C D K  P NC
Sbjct: 156 WGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 35  WDVGQTWRCVCTETVNRSPQVARVLAPGDFPXESSE-VCFDRKRSPENC 178
           W +G +  C C    N  P++   +    F  E  E  C D K  P NC
Sbjct: 156 WGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 35  WDVGQTWRCVCTETVNRSPQVARVLAPGDFPXESSE-VCFDRKRSPENC 178
           W +G +  C C    N  P++   +    F  E  E  C D K  P NC
Sbjct: 156 WGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 35  WDVGQTWRCVCTETVNRSPQVARVLAPGDFPXESSE-VCFDRKRSPENC 178
           W +G +  C C    N  P++   +    F  E  E  C D K  P NC
Sbjct: 156 WGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPDNKWGP-NC 203


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 415  PSCVTKYGTXLGPVATRLTLHNLYLASSGVIRWIVNLPLT 296
            P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 882  PFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  GCWTNLAVCMHRDRQPVPTSCASA 108
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  GCWTNLAVCMHRDRQPVPTSCASA 108
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  GCWTNLAVCMHRDRQPVPTSCASA 108
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 132 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 275
           N +KY L  N+   IV      V+ K++ D    AG+   ++I +T++
Sbjct: 98  NWVKYGLPVNQGDSIVSDDKCLVENKLKKDGDSCAGYCMTINITRTDD 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,866,948
Number of Sequences: 27780
Number of extensions: 188826
Number of successful extensions: 544
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)