Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32496
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1241 - 27286095-27286979                                         28   5.1  
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405...    27   8.9  

>12_02_1241 - 27286095-27286979
          Length = 294

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 397 CSGGLFWEYWFVLNASRLVEDHLAYAKRGQAETDGG 504
           CSG   W +  +LNA+ L      Y KRG  + DGG
Sbjct: 247 CSGIGAWVFNTLLNAALLWVFLHCYGKRGVCDDDGG 282


>11_04_0328 +
           16437947-16438091,16439953-16440062,16440446-16440514,
           16440840-16440955,16441049-16441103,16441206-16441326,
           16441541-16441635,16441728-16441826
          Length = 269

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 340 VFFFQKTFCFCIVNCLRQACSGGLFWEYWFVL 435
           + FF KTF       L++ C     WEY F +
Sbjct: 157 LLFFAKTFSASFQRLLKKQCGNRATWEYPFAV 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,172
Number of Sequences: 37544
Number of extensions: 185955
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)