Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32493
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 29 0.31
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 29 0.31
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.41
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.55
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 27 1.3
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.2
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 2.9
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac... 26 2.9
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 3.8
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 25 5.1
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 5.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.1
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 5.1
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 6.7
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 25 6.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.9
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 8.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.9
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 8.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.9
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.31
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 119 AYYLNGDVKTALEWTQRLLSVDPKHVRARGNIPHYQKTIAEQEAELKKQQRGETSDEPEE 298
AY G + A+E LS+DP H RA G + + ++ + A ++G D E
Sbjct: 126 AYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNE 185
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 29.5 bits (63), Expect = 0.31
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 296 EEDGQDYELSEYAKERKVYES-LCRGEMEIPHEITKRLKCWYVTDTHPFLK------LAP 454
++D YE E +E+++ E L +EIP K ++ + PF K AP
Sbjct: 61 QKDKNIYEPKENLEEKELSEGFLDESRLEIPEAGHNWEKSFFGLSSQPFSKEICDLLTAP 120
Query: 455 IKVEQMYVKPDIFMF 499
++V+ + +KPD ++
Sbjct: 121 LEVDDIEIKPDGILY 135
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 65 ENVMYPFTEVDILEYIGFAYYLNGDVKTALEWTQRLLSVDPKHVR 199
+N P T +DI IG Y + K A E +R+L+ P H +
Sbjct: 503 DNPPKPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVLAETPNHAK 547
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.55
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 209 NIPHYQKT---IAEQEAELKKQQRGETSDEPEEEDGQDYELSEYAKERKV 349
++P Q+T I QE E+K+++ E +E EEE+ +YE SE E KV
Sbjct: 338 SLPETQRTTSRIETQEEEIKEEEM-EGEEEEEEEEVPNYE-SENELEDKV 385
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 511 HHFVEHKYVGLHVHLLHFDW 452
H F+ H+YV +H LH W
Sbjct: 137 HRFLHHRYVYPRLHKLHHKW 156
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 233 IAEQEAELKKQQRGETSDEPEEEDGQDYELSEYAKERK 346
IAE+E E ++++ E +E EEE G ++ + +++
Sbjct: 339 IAEEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKE 376
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 236 AEQEAELKKQQRGETSDEPEEEDGQDYELSEYAKERK 346
+E+E E + ++ E SDE E E + E E ++ +
Sbjct: 88 SEEEEETESEEDSEVSDESESESESESESEEESESEE 124
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 248 AELKKQQRGETSDEPEEEDGQDYELSEYAKERKVYESLCRGEMEIP 385
+ LKKQ + +E EE+ SE ++E E E+E+P
Sbjct: 28 SRLKKQDDSSSEEESSEEESASSSESESSEEESESE---ESEVEVP 70
>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 95 DILEYIGFAYYLNGDVKTALEW 160
+I+ Y +A+ LNGD+ L W
Sbjct: 114 EIIRYAFYAFNLNGDIPAFLTW 135
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 287 EPEEEDGQDYELSEYAKERKVYESLCRGEMEIPHE 391
+PE++D ++ + K+ KV ESL E+E+ E
Sbjct: 34 KPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDE 68
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 5.1
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 DYTNALAWMKEALRKYKDENVMYPFTEVDILEYIGFAYYLNGDVKTALEWTQRLLSVDPK 190
+Y+ A+ ++ R N++ ++ D L G Y NGD + L +DP
Sbjct: 170 EYSLAIRKFEQVARASVQNNLL-KWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPS 228
Query: 191 HVRARGN--IPHYQKTIAEQEAEL 256
R + Q TI +A +
Sbjct: 229 FASTREYQLLKDLQDTIEASDANM 252
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 233 IAEQEAEL-KKQQRGETSDEPEEEDGQDYELSEYAKERK 346
I E++AE+ KK++ E + E EEE ++ E E +++K
Sbjct: 342 INERDAEIIKKEEELEAAKEEEEEIWRNMEQLEDTEDKK 380
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 5.1
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 155 EWTQRLLSVDPKHVRARGNIPHYQKTIAEQEAELKKQQRGETSDEPEEEDGQDYELSEYA 334
E T+R L V K R + +Q I ++ + +++ +T EEE Q L E
Sbjct: 53 ETTKRKLLVKQK----RKSNKEFQSNIIKKRKDEERKGTLKTEQANEEELLQRSRL-ELE 107
Query: 335 KERKVYESLCRGEMEI 382
++ K Y+ GE+EI
Sbjct: 108 RKAKKYDQYAAGELEI 123
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 472 HLLHFD--WGQL*KRMRVGDVPTFQPLSN 392
HL+H + WGQ + +GD+ +FQ L N
Sbjct: 88 HLVHMNQFWGQPDAMILLGDLVSFQHLDN 116
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 239 EQEAELKKQQRGETSDEPEEEDGQDYELSEYAKERKVYESLCR 367
E + E K + + EEE G++ E EY E+ + + R
Sbjct: 51 ESDHESKSSSKKLKENAKEEEGGEEEEEDEYVVEKVLKHRMAR 93
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 227 KTIAEQEAELKKQQRGETSDEPEEEDGQDYELSEYAKERKVYESLCRGEMEIPHEITKRL 406
K + E + +Q+R +TS + G + +Y K+ K+Y+ + R M + K+
Sbjct: 181 KILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDSKIYQ-VARENMMTLLSMIKQ- 238
Query: 407 KCWYVTDTHPFLKLAPI 457
V+ T+ F+ L PI
Sbjct: 239 ----VSSTYTFILLPPI 251
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 140 VKTALEWTQRLLSVDPKHVRARGNIPHYQKTIAEQEAELKKQQRGETSDEPEEEDGQDYE 319
++ AL+W +L + VR++ TIA EA + QQ T E +++ D
Sbjct: 318 MRKALQWFTQLSRTEQDDVRSQSINKELNITIAILEA-YEAQQTETTETEGVDKEDSDKA 376
Query: 320 LSEYAKERKVYESLCRGE 373
S E +V ++ E
Sbjct: 377 SSVQGNEDEVPDTASETE 394
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 260 KQQRGETSDEPEEEDGQDYELSEYAKERKVYES 358
+QQRG +S +P E D L + E K+YE+
Sbjct: 266 EQQRGTSSSQPSENDANITALPK--PEPKMYEN 296
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 11 DYTNALAWMKEALRKYKDENVMYPFTEVDILEYIGFAYYLNGDVKTALEWTQRLL 175
D T L++ E + K + V+ E Y+G A L+G +TA +W RLL
Sbjct: 225 DKTLVLSYSAEKDQLRKSQKVIADTFEA----YLG-ALILDGQEETAFQWVSRLL 274
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 347 LCVPLRTLIIRNLDRLLLQAHPRFP 273
L VP+ T+IIR LD + + P P
Sbjct: 556 LGVPIATIIIRALDLITIVVPPALP 580
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 251 ELKKQQRGETSDEPEEEDGQDYELSEYAKERKVYESLCRGEMEIPHEITKRLKCWYVTD 427
E +K GET EP+E D + ++ + + GE E + R + + V D
Sbjct: 232 ENQKGSAGETKSEPKEADKGSGDSTKSTMHQLSDSEIITGEEEEESIFSVRARLYVVAD 290
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 421 HRHASVFKVGPNQSG 465
HR +SV K+ PN++G
Sbjct: 1884 HRQSSVIKIDPNETG 1898
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 305 GQDYELSEYAKERKVYESLCRGEMEIPHEI-TKRLKCWYVTDTHPFLKLAPIKVEQMYVK 481
G YE S + G+ EI + T R C + H FL I+ +++YV+
Sbjct: 566 GLSYEQSSSVWSTYIKCLASAGQKEIKRSVETGRAICCICSSLHKFLYSKSIRKDELYVE 625
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 197 RARGNIPHYQ--KTIAEQEAELKKQQRGETSDEPE--EEDGQDYELSE 328
R RG + + + ++E E ++++ S EPE EE+ +D EL++
Sbjct: 332 RGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELAD 379
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 284 DEPEEEDGQDYELSEYAKERKVYESLCRGEME 379
D EE + DYEL++ +E K+ + R EM+
Sbjct: 574 DLSEEPNDVDYELAQEIRELKMSILMVRTEMD 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,712
Number of Sequences: 5004
Number of extensions: 40918
Number of successful extensions: 202
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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