Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32488
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 132 3e-32
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 66 2e-12
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 40 2e-04
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 1.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 2.9
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 2.9
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 26 3.8
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 5.1
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 8.9
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 132 bits (319), Expect = 3e-32
Identities = 57/114 (50%), Positives = 82/114 (71%)
Frame = +3
Query: 174 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLL 353
+ +++++R+D+++++ + PW+ DP FF+ +KISA+ALLKM+ H G LEVMG +
Sbjct: 3 NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62
Query: 354 GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGW 515
GKV+ ++I++DSFALPVEGTETRVNA +A EY Y K V RHEN IGW
Sbjct: 63 GKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGW 116
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 66.5 bits (155), Expect = 2e-12
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 270 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 446
+ IS+LALLKM+ H R G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89
Query: 447 YEYMTAYIEAAKQVGRHENAIGW 515
++ ++ KQ GR E +GW
Sbjct: 90 FQ--KNMMDMLKQTGRPEMVVGW 110
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 264 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 434
+ + + L LL V + RS G V+G+LLG+ + + + V +S+A+P E E +
Sbjct: 15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74
Query: 435 QAQAYEYMTAYIEAAKQVGRHENAIGW 515
+ +M + E K++ +E +GW
Sbjct: 75 WFLDHNFMESMNEMFKKINANEKLVGW 101
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 241 HGLAARISCCCFLSYRYISSTFETVSMLFAITQVF*AIDACESALVD 101
H A + C SYR ++ +E + +L +F +C +VD
Sbjct: 588 HSKAVQQEFCSLYSYRIVNLLWEILGILLTPVLLFFTFPSCSQDIVD 634
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 FNQYSFEIKKNSHCIVIQLNLYSEYYFITHNGI-NKCRFTSIYC 133
F + F K +C++ +LN + E +NG+ + TSI C
Sbjct: 1296 FISHDFTQNKAKNCVLSELNFFLELLHSLNNGLPSDSHKTSIVC 1339
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 224 DILLLFLVVSIYIINVRNGFNVIRHHPSFLSNR 126
D+L+LF V+I +INV + + HH + S R
Sbjct: 188 DLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLR 220
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 187 IYIDTTRNNNRISSPLNH 240
IY+D T +N +I+ PL H
Sbjct: 90 IYVDPTSSNKKITIPLGH 107
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 239 WFSGEDILLLFLVVSIYIINVRNGFNVIRH 150
W I+ +F ++ IY+I NGF I +
Sbjct: 77 WAKRWSIVFMFCLMQIYVIWTSNGFGSIEY 106
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 358 LPSNSPMTSSVPPDLACITIFSNARAD 278
LP +S TS++PPD T+ + +AD
Sbjct: 8 LPVSSTFTSNLPPDPLVPTVQAMKKAD 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,819
Number of Sequences: 5004
Number of extensions: 52498
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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