Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32488
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 155 3e-38
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 72 3e-13
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 72 3e-13
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.003
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 30 1.3
11_06_0372 + 22781438-22781977 28 5.1
10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705 28 5.1
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090... 28 5.1
01_05_0355 - 21330990-21331190 27 6.8
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 8.9
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 27 8.9
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 155 bits (375), Expect = 3e-38
Identities = 73/127 (57%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Frame = +3
Query: 129 IAQKTWVMANNIETVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 296
+A++TW + NNI ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 297 KMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEA 476
KMV+HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA AYEYM Y
Sbjct: 61 KMVVHARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYMVEYSTI 120
Query: 477 AKQVGRH 497
KQ+G H
Sbjct: 121 NKQIGSH 127
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 71.7 bits (168), Expect = 3e-13
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 440
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P G T V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 84
Query: 441 QAYEYMTAYIEAAKQVGRHENAIGW 515
+ + T ++ KQ GR E +GW
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGW 109
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 71.7 bits (168), Expect = 3e-13
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 440
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P G T V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 84
Query: 441 QAYEYMTAYIEAAKQVGRHENAIGW 515
+ + T ++ KQ GR E +GW
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGW 109
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 276 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 404
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 102 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKIS 281
STS+ Q + + W+ + + ++NV DI + +D A +K+ H D+ ++
Sbjct: 88 STSSLPQVATCKNNWLAVTSEKWLANVGDIDSVHNQAMRDCDAL--LKKEQHI--DVSLN 143
Query: 282 ALA-LLKMVMHARSGGTLEVMGLLLGKV 362
+ + K+ + R G+++V LLL +V
Sbjct: 144 SQSNAEKIAYYTRLNGSIDVTRLLLKQV 171
>11_06_0372 + 22781438-22781977
Length = 179
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 93 TMASTSADSQASIAQKTWVMANNIETVSNVDDI 191
T +TSA + +A+ W++A E +N DDI
Sbjct: 31 TTTTTSAMAPLPLAEVKWILAQKREPYTNPDDI 63
>10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705
Length = 320
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 516 TNQWHFHDVQPVWQP---QCKQSCIHMLVLEHSHVFRSPQ 406
+++WH H QP W+P K S + LE + R+P+
Sbjct: 12 SSRWHPHRCQPYWRPPTWDMKGSNVCFTALEQILISRAPR 51
>01_07_0106 -
41107673-41107942,41108362-41108574,41108877-41109041,
41109431-41109649,41110205-41110324,41110427-41110489,
41111034-41111606,41111691-41111858,41112414-41112495,
41112667-41112743,41113031-41113101,41114315-41114363
Length = 689
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 11 QYSFEIKKNSHCIVIQLNLYSEY 79
Q++FE+KK S C V +N +EY
Sbjct: 14 QFTFEVKKQSSCTVHLVNKSNEY 36
>01_05_0355 - 21330990-21331190
Length = 66
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 254 TFLQRHKDISSCIAEDGDACKIWWHTGGHGTITW 355
T L+RH+ + S +A+D +A + + G G I +
Sbjct: 12 TLLRRHRILESLLADDEEAARFFARLGDCGAINY 45
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 339 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHE 500
+G G+ N M+++D A +EG + QAQA + I+ Q G+ +
Sbjct: 748 IGAAAGRSLENQMLLLDGQAKAMEGLNHLYSFQAQALQESRETIQKLAQFGQQQ 801
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 35 NSHCIVIQLNLYSEYYFITHNGI--NKCRFTSIY 130
N V QLN Y + YF++ +GI KC F ++
Sbjct: 115 NFSSFVRQLNTYDKVYFLSISGIKRGKCGFRKVH 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,306
Number of Sequences: 37544
Number of extensions: 333917
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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