Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32488
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 181 3e-46
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 78 4e-15
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 69 3e-12
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.28
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 31 0.65
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 28 4.6
U61946-3|AAC24395.2| 337|Caenorhabditis elegans Serpentine rece... 28 4.6
Z81109-10|CAB03242.2| 290|Caenorhabditis elegans Hypothetical p... 27 6.0
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 27 6.0
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 27 6.0
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 27 6.0
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 27 6.0
AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical ... 27 6.0
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 8.0
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 8.0
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 181 bits (440), Expect = 3e-46
Identities = 81/131 (61%), Positives = 100/131 (76%)
Frame = +3
Query: 123 ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 302
+S+ Q+ W NN++ NVD I+ Y+ KQQ +I AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10 SSVPQRNWEKENNVQ---NVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66
Query: 303 VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 482
MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E
Sbjct: 67 TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126
Query: 483 QVGRHENAIGW 515
GR E +GW
Sbjct: 127 TEGRKEKVVGW 137
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 77.8 bits (183), Expect = 4e-15
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 428
P + + IS+LALLKM+ HARSG LEVMGL+LG VD T+ V D FA+P GT V
Sbjct: 23 PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82
Query: 429 NAQAQAYEYMTAYIEAAKQVGRHENAIGW 515
+ Y+ T +++ K VGR EN +GW
Sbjct: 83 ESVDPVYQ--TKHMDLLKLVGRTENVVGW 109
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 270 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 446
+ IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92
Query: 447 YEYMTAYIEAAKQVGRHENAIGW 515
++ ++ KQ GR E +GW
Sbjct: 93 FQ--AKMLDMLKQTGRPEMVVGW 113
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 312 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 491
A++ G + MG L+G + ++ V + FA+P + + Q + M I A K+
Sbjct: 29 AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85
Query: 492 RHENAIGW 515
+E +GW
Sbjct: 86 PNEQPVGW 93
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 30.7 bits (66), Expect = 0.65
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +3
Query: 270 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 434
+ + L LL +V H +++ V+G+LLG + + T+ + +SFA+P + + +
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 435 QAQAYEYMTAYIEAAKQVGRHENAIGW 515
+Y+ + +V E +GW
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGW 127
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 42 IVL*FSLTYILNIILSHTMASTSADSQASIAQKTWVMANNIETVSNVDDI 191
+VL + T ++ +++S+ + S S Q T +ANNI + N D I
Sbjct: 10 VVLLLAATVVVTVLISNYVHQLSMSSGTPTIQNTVSIANNIRQLINTDKI 59
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -2
Query: 338 DLQCATRSCMHHHLQQCKS*----YLYVFEEMWVFLPW 237
D C+ R MH+H +Q + +LYVF E+ FLPW
Sbjct: 197 DQYCSPR--MHNHEEQGRVDDLWSWLYVFVELRAFLPW 232
>U61946-3|AAC24395.2| 337|Caenorhabditis elegans Serpentine
receptor, class h protein222 protein.
Length = 337
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 314 CMHHHLQQCKS*YLYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRN 171
C+H ++ YL V E+ W FL W E +L+ + I+I +++
Sbjct: 180 CLHPDVRNAPL-YLVV-EDRWKFLSWTVAEALLVALTLQGIFIFIIKS 225
>Z81109-10|CAB03242.2| 290|Caenorhabditis elegans Hypothetical
protein R10D12.4 protein.
Length = 290
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 485 LFGSLNVSSHVFICLCLSIHTC 420
+FG LN S++ +C ++H C
Sbjct: 248 IFGKLNTESNIISPICFAVHCC 269
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 339 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 446
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 102 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 224
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 102 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 224
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 339 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 446
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical
protein Y40H7A.6 protein.
Length = 343
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 275 LYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRNGFNVIRHHPSFL 135
L +W+ + +F I+LL SIY + V NV FL
Sbjct: 21 LEAMNSIWIKINFFLSTSIILLTFFASIYAVRVLKFHNVYSSGTQFL 67
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 422 TCECSSTSI*IHDCLH*GCQTGWTS*KCH 508
TCEC + ++ H CQ GW KC+
Sbjct: 1213 TCECENGALCDPISGHCSCQPGWRGKKCN 1241
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 422 TCECSSTSI*IHDCLH*GCQTGWTS*KCH 508
TCEC + ++ H CQ GW KC+
Sbjct: 1213 TCECENGALCDPISGHCSCQPGWRGKKCN 1241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,323
Number of Sequences: 27780
Number of extensions: 302315
Number of successful extensions: 901
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -