Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32482
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             209   1e-56
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   10.0 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   10.0 

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  209 bits (510), Expect = 1e-56
 Identities = 97/103 (94%), Positives = 102/103 (99%)
 Frame = +1

Query: 208 EMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKC 387
           EMATAA+S+SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 388 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIK 516
           DVDIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIK
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIK 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 174 LLDVTNDFPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 4
           ++D+T     S  G+ V     +L+ +VG  A   +  E+G G + VT  + +   DT
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 401 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 312
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 401 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 312
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 369 QLHHEVRRRHP*GPVRQHRH 428
           Q+HH++  +HP    +Q +H
Sbjct: 167 QMHHQMHTQHPHMQPQQGQH 186


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 369 QLHHEVRRRHP*GPVRQHR 425
           QL+ +V+  H   PV+QHR
Sbjct: 266 QLNSDVQPGHGSPPVKQHR 284


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 10  SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 108
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 384 LHDGVVHGLVDAARFHTQEG 325
           +H G +H  V   ++ TQ+G
Sbjct: 907 VHQGQIHLTVAVVQYKTQDG 926


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 6   CLPHRTHLRRLRSAPRHPPS 65
           C P   +L ++ S P HPP+
Sbjct: 79  CDPVPGNLEQIGSRPLHPPA 98


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 202 RSRGRHSRASP*CHERFPSQR 140
           RSR R  + +  CH R+   R
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSR 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,314
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)