Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32478
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   1.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.2  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   2.9  

>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +1

Query: 241 IPPTFAMYEALKDSCQN----NATFFKPDDTENGQRLY 342
           I P   + + LKD+ Q     +AT++ P DT+NG++ Y
Sbjct: 11  ILPIKGVLQKLKDNAQKTVLLDATWYLPTDTKNGKKEY 48


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 449  FPGDFVSKSYCGATFRTWSTRGHTVSI 369
            FP   V+  Y G++   W+ RGH  ++
Sbjct: 1164 FPWKLVTHDYTGSSSSEWAVRGHKENV 1190


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 452  PFPGDFVSKSYCGATFRTWSTRGHTVSIWS 363
            PFP +F     C A +R  +  GH VS+W+
Sbjct: 1798 PFPIEFK----CDAPYRIHNYTGHAVSVWA 1823


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 AMYEALKDSCQNNATFFKPDDTENGQRLYQG 348
           A+ EAL +  + + +F    D ENGQ L QG
Sbjct: 459 ALLEALANMNREDPSFRYTQDLENGQLLIQG 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,913
Number of Sequences: 5004
Number of extensions: 42650
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)