Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32478
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    58   3e-09
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    29   2.6  
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
 Frame = +1

Query: 256 AMYEALKDSCQNNATFFKP--DDTENG--QRLYQGFMTLSDHIETVWPLVDHVRKVAPQY 423
           A+ E +   C +NAT F+       NG  +R+      L   IET+   +  +++VAP+Y
Sbjct: 59  AILELIVQMCSDNATHFEKLAQSGANGYNERMPVVQTALQTAIETLKGNIKKLQEVAPKY 118

Query: 424 DFDTKSPGNGYRSFVSVVDSCVLYSLKLSR 513
           D+D K+PGNGYRS + + D+ +L+ + L +
Sbjct: 119 DYDEKTPGNGYRSLICICDTTLLHVVSLQK 148


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 262  YEALKDSCQNNATFFKPDDTENGQ-----RLYQGFMTLSDHIETVWPLVDHV 402
            Y++  + CQ+N  + K     NG      R  + +  LS  + +VWP+V+ V
Sbjct: 1366 YDSAANMCQHNYVYGKCRTESNGTYCEVGRRTRTYFVLSGSVLSVWPIVEEV 1417


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +1

Query: 118 DFMRLKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDSCQNNA 297
           DF+ + F     RF  + L  ME  DP   A        D +     +Y +L  + +++ 
Sbjct: 130 DFLSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLELIYNSLNKN-KSST 188

Query: 298 TFFKPDDTENGQRLY 342
           T+F   +  +   LY
Sbjct: 189 TYFIAKNRNHDDLLY 203


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +1

Query: 118 DFMRLKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDSCQNNA 297
           DF+ + F     RF  + L  ME  DP   A        D +     +Y +L  + +++ 
Sbjct: 171 DFLSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLELIYNSLNKN-KSST 229

Query: 298 TFFKPDDTENGQRLY 342
           T+F   +  +   LY
Sbjct: 230 TYFIAKNRNHDDLLY 244


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 26/91 (28%), Positives = 42/91 (46%)
 Frame = +2

Query: 47  YITIQLKI*RSPYKYNANKFSSRKIL*DLNSLLAESGLLPVRLK*WNFPIRLQVLHTAVQ 226
           YIT++  + +  Y YNA K    K+   + SL  E  ++   +     P R ++L T V 
Sbjct: 280 YITLEETLSQYAYDYNAEKVQFSKLQAQVPSLKLEK-IIEEMMN----PNRKKLLVTKV- 333

Query: 227 KATMVFHQLSLCMKR*KTLVRTTRHSSNRTI 319
           K  MV H+ SL       L +  + +  RT+
Sbjct: 334 KPRMVAHKHSLFFDEKMNLEKLLKSTPKRTL 364


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = +1

Query: 130 LKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTF-AMYEALKDSCQNNATFF 306
           L+ +T+ ++    +  + E +D   S  Y    +   +      + E +KD+ +  +T  
Sbjct: 477 LRSLTQQIKLIQDSGSLQEHADGAQSLKYLLQSTFQPLVVHLNCLKEKIKDTYKIASTAR 536

Query: 307 KPD---DTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPGN 450
                   E+  +L + F   S  +    PL+  +RK+A +Y  D+ S  N
Sbjct: 537 SAKILRKMESDGKLVEKFKEFSSAVSKSLPLLVSLRKIAEEYKKDSSSEMN 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,143
Number of Sequences: 27780
Number of extensions: 235382
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)