Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32473
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 318 3e-88
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 170 1e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 168 5e-43
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 98 8e-22
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 92 5e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 80 2e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 6e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 34 0.015
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 8.9
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 318 bits (781), Expect = 3e-88
Identities = 150/171 (87%), Positives = 160/171 (93%)
Frame = +2
Query: 2 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK 181
DLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEK
Sbjct: 179 DLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEK 238
Query: 182 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 361
SYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N V
Sbjct: 239 SYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVV 298
Query: 362 MSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 514
MSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASL
Sbjct: 299 MSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASL 349
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 170 bits (413), Expect = 1e-43
Identities = 77/171 (45%), Positives = 112/171 (65%)
Frame = +2
Query: 2 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK 181
++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ +
Sbjct: 184 EIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIH 243
Query: 182 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 361
+Y+LPD Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 362 MSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 514
+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASL
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASL 354
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 168 bits (408), Expect = 5e-43
Identities = 82/182 (45%), Positives = 122/182 (67%), Gaps = 11/182 (6%)
Frame = +2
Query: 2 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK 181
D+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + +T L +
Sbjct: 179 DVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMR 238
Query: 182 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 361
+Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V
Sbjct: 239 NYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIV 298
Query: 362 MSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILA 508
+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 299 LSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLA 358
Query: 509 SL 514
+
Sbjct: 359 DI 360
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 97.9 bits (233), Expect = 8e-22
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Frame = +2
Query: 62 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 241
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 242 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 394
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 395 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASL 514
++R+Q E+ LA S I + +VW GGSILASL
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASL 401
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 91.9 bits (218), Expect = 5e-20
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Frame = +2
Query: 2 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS--TSL 175
D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M + L
Sbjct: 187 DVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKL 244
Query: 176 EKSYELPD------------------GQVITIGNERFRCPEALFQPSFLGMESCGIHETV 301
E Y LPD QV+ + NERF PE LF PS + + GI E V
Sbjct: 245 EICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAV 304
Query: 302 YNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 469
S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 305 MQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 79.8 bits (188), Expect = 2e-16
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Frame = +2
Query: 5 LAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTS-- 172
LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 211 LAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRY 265
Query: 173 LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKD 343
L+ + E G TI G ERF PE F P + + E V N + +D+RK
Sbjct: 266 LKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKG 325
Query: 344 LYANTVMSGGTTMYPGIADRMQKEITALAPSTI--------------KIKIIAPPERKYS 481
LY N V+SGG+T++ +R+Q+++ + I + +I+ ++ +
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNA 385
Query: 482 VWIGGSILA 508
VW GGS+LA
Sbjct: 386 VWFGGSLLA 394
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 284 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 463
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 464 ---PERKYSVWIGGSILASL 514
ER Y+ W+GGSIL+SL
Sbjct: 385 GHVVERSYASWLGGSILSSL 404
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 6e-10
Identities = 25/92 (27%), Positives = 50/92 (54%)
Frame = +2
Query: 224 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 403
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 404 MQKEITALAPSTIKIKIIAPPERKYSVWIGGS 499
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.015
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 338 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSI 502
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACI 584
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 289 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 417
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 436 DHQDQDHRSPREEVLRMDRWIHPG 507
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +2
Query: 206 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 382
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 383 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 481
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 477 YFLSGGAMILILMVEGARAVISFCILSAIPGY 382
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 116 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 241
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 410 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 514
KEI++ A S I + + P E+ W ILA L
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPL 246
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 101 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 208
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,264
Number of Sequences: 5004
Number of extensions: 33136
Number of successful extensions: 125
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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