Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32472
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 57 2e-09
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 2.2
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 2.9
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 3.8
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 3.8
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 25 6.7
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 25 6.7
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 25 6.7
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 6.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.9
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/93 (32%), Positives = 46/93 (49%)
Frame = +3
Query: 237 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 416
+L ++ + +LE + D G+ + GYR Q ++ P KGG+RF V +K L
Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94
Query: 417 SALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 515
FK A +P GG K G +PK S++E
Sbjct: 95 GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNE 127
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 258 CDHILEIQFPLRR 296
CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +3
Query: 354 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 485
TPT G ST +T V+ALS L ACV P G GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 2.9
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 333 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 154
R+SL +N + AS+ + Q+ +L + S + + + NL+ LRQ
Sbjct: 45 RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104
Query: 153 LGGKNILPCGRTS-DSHL*EYL*AYLE 76
GGK + C TS ++ +YL Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 363 KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 482
KGG F + D A S T C +PFG GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 336 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 163
++D + + + + + EIES + + + EYR LS + + VSL S + Q R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 369 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKAGIKINPKEYS 506
GIR T +TR ++A +L+ C C VD+ F A+ GI + Y+
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYA 151
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 101 YKCESEVLPHGRIFFPPSLSSCRRQAC 181
Y CE ++ PP ++CR++ C
Sbjct: 89 YNCEKQICRKCYARLPPRATNCRKKKC 115
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 101 YKCESEVLPHGRIFFPPSLSSCRRQAC 181
Y CE ++ PP ++CR++ C
Sbjct: 89 YNCEKQICRKCYARLPPRATNCRKKKC 115
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 360 LESCVWNVVRDSLISFRNRQN-RASEEIE 277
+ C+WN++R NR+N RA+ E++
Sbjct: 612 MRRCMWNILRVEHEEIYNRENLRAARELK 640
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 129 MVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKV 230
+++ ++H AC+V+ D+LV + + E +K +
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKVI 2777
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 63 ASHEIPDKLKDIPTSANPKF 122
AS+ +PD ++ PT +NP F
Sbjct: 201 ASNNVPDFNQNYPTESNPMF 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,113
Number of Sequences: 5004
Number of extensions: 45490
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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