Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32468
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   1.7  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   3.8  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   6.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.9  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 299  GKPKNIDDANEDTIXRVCXDYHERIARLEDEKFDLEYIXKRKDMEISDLNSQVNDL 466
            G    ID++  +++ R    Y  ++  ++     LE   +R + EISD  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 308 KNIDDANEDTIXRVCXDYHERIARLEDEKFDLEYIXKRKDMEISDLNSQVNDLRGKFXKP 487
           +++  A E+    +  DY  +I  LE    + +        +I++LNSQ+++L+ K  + 
Sbjct: 547 QDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEA 606

Query: 488 TLK 496
             K
Sbjct: 607 NKK 609


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 317 DDANEDTIXRVCXDYHERIARLEDEKFDLEYIXKRKDMEISDLNSQVN 460
           +D+N  TI     D+H   A  E+EK     + K   ME+ ++N  V+
Sbjct: 23  EDSNRGTIT----DFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 KNIDDANEDTIXRVCXDYHERIARLEDEKFDLEYIXKRKD 427
           +NI D++ED I ++   Y +  A   DE+   E+    KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 359 YHERIARLEDEKFDLEYIXKRKDMEISDLNSQV 457
           +HE I +L+D + +L    ++K++ IS L   V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 344  RVCXDYHERIARLEDEKFDLEYIXKRKDMEISDLNSQVNDL 466
            R+C    + +   + + +DL++       E S L+ QVNDL
Sbjct: 898  RLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDL 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,733
Number of Sequences: 5004
Number of extensions: 16513
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)