Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32462
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 44 2e-05
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 38 7e-04
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 28 0.72
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 2.9
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 6.7
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.9
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 25 8.9
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 25 8.9
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 43.6 bits (98), Expect = 2e-05
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Frame = +3
Query: 3 MRYIYLT--TIFSVV-FAFEKDITFTVQAGMTDCFYQRA-QPNELIDIEYQVIDATHGEL 170
MR I L+ T+F + A ++TF ++ C+Y + E Y V + G
Sbjct: 1 MRVITLSGITLFLLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAV--QSGGSF 58
Query: 171 DISFQLTDPVGRVIVSDYKKPENSHRHQATLNGDYRFCFDNTFSTFSQKTVFFDILIXXX 350
D+ + + P + + K+ + G+Y FCFDN STF+ K V +I +
Sbjct: 59 DVDYMIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENE 118
Query: 351 XXXXXXXXXXXXXXLGTAAESYIMRVRDIAESVNRVRD 464
+ +S ++ + ++RV++
Sbjct: 119 LSLPALTRDEAKDYKKDSMQSTVLEISTALSEIDRVQN 156
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 38.3 bits (85), Expect = 7e-04
Identities = 19/89 (21%), Positives = 39/89 (43%)
Frame = +3
Query: 69 TVQAGMTDCFYQRAQPNELIDIEYQVIDATHGELDISFQLTDPVGRVIVSDYKKPENSHR 248
T++ +CFY+ + N+ + + YQ G+ +S + +P G+++ + +
Sbjct: 25 TLKPHQRECFYENLRNNDQMSVTYQT--NVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYS 82
Query: 249 HQATLNGDYRFCFDNTFSTFSQKTVFFDI 335
G Y +CF N K V F++
Sbjct: 83 FTVKNPGKYMYCFYNDALDGESKEVLFNV 111
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 28.3 bits (60), Expect = 0.72
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 267 GDYRFCFDNTFSTFSQKTVFF 329
G Y F FDNTFS KTV F
Sbjct: 107 GLYAFVFDNTFSKTKPKTVTF 127
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 113 LCSLVETVGHSCLNSKSYIFFKGKNNTENSSQIY 12
L S++ETVGH L+ Y+F + N N + +
Sbjct: 889 LVSILETVGHHVLHGWQYVFEMLRFNCLNGATCF 922
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 377 RQRNGTWYCSRELHNEGEGYSGVREPGEGQRVRGQETPR 493
RQ G WY + + G G R G G R+ + PR
Sbjct: 626 RQNRG-WYRNNRMEGHGTGMRTNRGRGRGGRMNRMQHPR 663
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -2
Query: 470 HVVPHPVHGLRYIPHPHYVALGCST 396
H P+H + + PH ++ CST
Sbjct: 278 HAHSGPIHSVAFNPHNDFILATCST 302
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 163 VNWTYHFNSLTLLDG**SPTTRSQRTLTGIKPP*METTDFVLTT 294
VN T+H TL DG T + +T TG +ET+ +TT
Sbjct: 71 VNKTHHTEYTTLTDGSIDTYTITAKTDTGTDVVVVETSANTITT 114
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 399 TAAESYIMRVRDIAESVNRVRDNVSAAKRLQELQSAHE 512
T+ E Y ++ DI E N DN L +LQ + E
Sbjct: 38 TSNEKYNEKIEDINERSNPQWDNAGLENLLNQLQDSVE 75
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 474 RTRCPSPGSRTPLYPSPSLCSSRLQ 400
+T P P RTP SP SS+LQ
Sbjct: 387 KTNTPRPLERTPSSVSPVKASSQLQ 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,900
Number of Sequences: 5004
Number of extensions: 37613
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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