Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32462
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 31 0.42
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 31 0.55
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 30 1.3
07_03_1257 - 25241194-25242018 28 3.9
02_01_0302 - 2021221-2023305 28 3.9
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 28 5.1
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 28 5.1
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 27 6.8
06_03_0192 + 17755807-17755941,17756023-17756235,17758003-177580... 27 6.8
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 168 LDISFQLT--DPVG-RVIVSDYKKPENSHRHQATLN-GDYRFCFDNTFSTFSQKTVF 326
LDI F + P G + ++ Y++ E + T++ G Y+ +DN++S+F +K VF
Sbjct: 364 LDIGFHVEYISPSGQKTLILPYRRYEADQGNFCTVSAGSYKLVWDNSYSSFFKKGVF 420
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 31.1 bits (67), Expect = 0.55
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Frame = +3
Query: 60 ITFTVQAGMTDCFYQRAQPNELIDIEYQVIDATHGELD--------ISFQLTDPVGRVIV 215
+ F +++G T C + N ++ +Y V+ D IS ++T P G +
Sbjct: 38 LRFDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSHRISLRVTSPYGNSVH 97
Query: 216 SDYKKPENSHRHQATLNGDYRFCF 287
P + AT GDY CF
Sbjct: 98 YAENVPSGNFAFTATEAGDYLACF 121
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 389 GTWYCSRELHNEGEGYSGVREPGEGQRVRGQE 484
G W+C L + +G+ + +PG G V G +
Sbjct: 480 GNWFCPECLIQKNDGFKNMVKPGRGAEVLGMD 511
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = -1
Query: 501 TATLGVSWPRTRCPSPGSRTPLYPSPSLCSSRLQYQVPFLCRHHNLSPLSP 349
TA P T PSP S PL P P R +P RH +L P +P
Sbjct: 10 TAAAAAECPATS-PSPSSPPPLQPRP-----RSPRPMPQAVRHRSLQPPAP 54
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 456 PGSRTPLYPSPSLCSSRLQYQVP 388
PGS TP YPSP S+ Y P
Sbjct: 487 PGSTTPSYPSPPSSSTTPSYHSP 509
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 174 ISFQLTDPVGRVIVSDYKKPENSHRHQATLNGDYRFCFDNTFSTFSQKTVFFDI 335
I +T P G + + K + +A G Y+FCF N + + +TV F I
Sbjct: 65 IDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYG--APETVSFYI 116
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 516 WPRARTATLGVSWPRTRCPSPGSRTPLYPSPSLCSS 409
WP + ++ G + R PSP S P +PS SS
Sbjct: 58 WPSSSSSNSGNTSTRKASPSPSSPAPAASTPSSSSS 93
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Frame = +3
Query: 90 DCFYQRAQ-PNELIDIEYQVIDAT----HGELDISFQLTDPVGRVIVSDYKKPENSHRHQ 254
+CF + + + + VI A + E + + DP G I K +
Sbjct: 33 ECFSHNVDYEGDTVHVSFVVIKAETPWHYTEDGVDLVVRDPNGNQIHDSRDKISDKFEFI 92
Query: 255 ATLNGDYRFCFDNTFSTFSQKTVFFDILI 341
G +RFCF N S + +TV FD+L+
Sbjct: 93 VHRRGVHRFCFTNK-SPY-HETVDFDVLV 119
>06_03_0192 +
17755807-17755941,17756023-17756235,17758003-17758086,
17759280-17759948
Length = 366
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +2
Query: 410 ELHNEGEGYSGVREPGEGQR----VRGQETPR 493
E EGEG SG RE G G+R +R QE R
Sbjct: 88 EGEGEGEGSSGQRERGSGERDDWFLRAQEIKR 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,799
Number of Sequences: 37544
Number of extensions: 255410
Number of successful extensions: 820
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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