Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32462
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.81 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 126 LTRSAVLSGRNSRSFLLEQ*KLYLFQRQKQH 34
           L +  +LS    +SF+ +Q  LYL Q+Q+QH
Sbjct: 77  LLQQHILSPTQLQSFM-QQHSLYLQQQQQQH 106


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 216 SDYKKPENSHRHQATLNGDYR 278
           SDY    + +RH +TL+ D++
Sbjct: 231 SDYSHTTDENRHSSTLDIDHK 251


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 217 ETITRPTGSVS*NDMSNSPCVASIT*Y 137
           E +  P GSVS  + + S  VAS+T Y
Sbjct: 484 EAVKSPLGSVSSTESTCSGEVASLTEY 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,280
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)