Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32461
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   8e-10
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   27   9.2  
SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)                    27   9.2  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 213 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGTSE-DWAY 386
           +D++            NRLS   D KVLL+EAG    T    +P     N+   + +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223

Query: 387 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKAD 515
           HT PQ    +   N+    PRG+V GGSSS+N M Y+RG+  D
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYD 262


>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 163 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 294
           +TY  P LPT F KI     T+TSS+++    D    I+L K     C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 198 LEDP--NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGT 368
           LEDP  +YDFI            NRL+     +VL++EAG    ++   IP   +S +  
Sbjct: 4   LEDPLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAG-FSKLLV 62

Query: 369 SEDW 380
           + DW
Sbjct: 63  NPDW 66


>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 345 PYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRG-KVLGGSSSINLMFYVRGNK 509
           P   N+  S   A H E ++ AC     KG   P+G K++   S+ ++    +G K
Sbjct: 497 PTPQNIPASAHVATHVEGRKRACVLCSKKGKTTPKGYKIMSARSAKSVSVVKKGRK 552


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 303 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 392
           +A  + T   ++ +P  +  GTSE+W+Y T
Sbjct: 41  QANYSSTKVEKVRRPTITTAGTSEEWSYFT 70


>SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)
          Length = 372

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 303 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 392
           +A  + T   ++ +P  +  GTSE+W+Y T
Sbjct: 41  QANCSSTKVEKVRRPTITTAGTSEEWSYFT 70


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 303 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 392
           +A  + T   ++ +P  +  GTSE+W+Y T
Sbjct: 41  QANCSSTKVEKVRRPTITTAGTSEEWSYFT 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,907
Number of Sequences: 59808
Number of extensions: 318586
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)