Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32455
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 1.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 2.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 3.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.8
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 3.8
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 5.1
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 6.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 6.7
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 25 8.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.9
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.3
Identities = 35/132 (26%), Positives = 51/132 (38%)
Frame = +3
Query: 18 ASATSTPSCDSRRLTLTSWTSYTRTPEYTGSGTP*VTWTFFRTADPSNRTVCCRRAATAE 197
+S +STP + T TS +S TP + + T T T + N T+ +A+
Sbjct: 532 SSVSSTPLSSANSTTATSASS---TPLTSVNST---TATSASSTPFGNSTITS--SASGS 583
Query: 198 PGSITQSPWSTTKLSSQCLVRTGTPLGRINVAPR*ALWATALGRAPAGYTSCAPPRTPPT 377
G T + +S T TPL VAP ++ TS A TP +
Sbjct: 584 TGEFTNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSA--STPLS 641
Query: 378 GSPAAGLSMRTT 413
S A S T+
Sbjct: 642 NSTVAPTSTFTS 653
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 1.7
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 177 RRAATAEPGSITQSPWSTTKL--SSQCLVRTGTPLGRINVA-PR*ALWATALGR-APAGY 344
+ A++ G+ T +P +T SS G P N P A + G+ A G
Sbjct: 122 KNTASSATGAATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGT 181
Query: 345 TSCAPPRTPPTGSPAAG 395
TS APP + + +PA G
Sbjct: 182 TSNAPPASSTSTTPATG 198
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 454 SPEDLGADGPDDALVVLIDSPAAGEP 377
+P+ LG PDD ++VL S G P
Sbjct: 151 APQPLGLPQPDDVMLVLHTSGTTGRP 176
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 9 PARASATSTPSCDSRRLTLTSWTSYTRTPEYTGSGTP 119
PA S TP+ ++ T SW + T+TP + + TP
Sbjct: 891 PAWNSGAKTPAWNAGNKT-PSWNNGTKTPAWNANQTP 926
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3
Query: 97 SGVRVYDVHEVSVSRLESQLGVDV 26
S +R +DV E+S+S +++G+D+
Sbjct: 156 SSIRFHDVTEISLSPESAKVGIDI 179
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 30 STPSCDSRRLTLTSWTSYTRTPEYTGSGTP*VTWTFFRTADPSNRTVCCRRAATAEPGSI 209
++P+ S T SW S T TG+ T VT + +NRT ++T+ S
Sbjct: 605 TSPNSTSSSSTQVSWNS---TTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661
Query: 210 TQSPWSTTKLSSQ 248
+ + S+T +S+
Sbjct: 662 SSTATSSTSFASE 674
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 60 TLTSWTSYTRTPEYTGSGTP*VTWTFFRTADPSNRTVCCRRAA 188
TL T Y +T Y G P +T+ + + P+ +C RRAA
Sbjct: 320 TLRPETMYGQTNCYVG---PNITYGIYESNVPNELFICTRRAA 359
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 317 GTRPSARGIYFLRTAEDSPYGLSRRGTVYENNEGVIRTIGS 439
GT + + F R A YG + VY NN R++GS
Sbjct: 145 GTEANETALKFARKAAFEKYGEGKSQIVYFNNSFHGRSLGS 185
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 170 LLQTCSHSRAWLYYAESVVNNEAFLAVP 253
LLQ C + LY + +VNNE ++P
Sbjct: 1126 LLQECDKIASQLYLSSRMVNNEPVESLP 1153
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 143 NSGSQQPNCLLQTCSHSRAWLYYAESVVNNEAFLAVPCKDWDAFRKNQCGAEISIMGYGT 322
N S++ N LQT + Y N +F A+P K+ R+ Q ++ +I + +
Sbjct: 330 NDDSRKKNSTLQTQNMRFKSSYGVRGPRNYSSFDALPSKNAPLVRQEQSASKKTIYAHSS 389
Query: 323 R 325
R
Sbjct: 390 R 390
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 199 GSAVAARLQQTVRLLGSAVRKKVHVTYGVPEPVY 98
G+ + + VR+ GSA R +H P+P++
Sbjct: 283 GTFLIKSAMELVRMFGSAYRAVLHFAEIFPQPIF 316
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 489 EYELYWLVNPAGHPRI-LEPMVLMTPS 412
++E WL++P G P + EP+V +P+
Sbjct: 89 KFEKNWLISPPGSPPVGWEPIVEESPN 115
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 357 PPRTPPTGSPAAG 395
PPR+P TGS AAG
Sbjct: 708 PPRSPGTGSLAAG 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,001
Number of Sequences: 5004
Number of extensions: 40875
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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