Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32455
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    31   0.65 
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    31   0.65 
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    28   4.6  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    28   4.6  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    28   4.6  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   6.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   6.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   6.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   6.0  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 180 VCSKQFGCWDPLFGKKST*PTASLSPYT 97
           V S  F CWD +F ++S  PT S SPY+
Sbjct: 270 VSSSHFPCWDSIFCQQSF-PTPSSSPYS 296


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = -3

Query: 448 EDLGADGPDDALVVLIDSPAAGEPVGGVLGGAQEVYPAGARPSAVA 311
           E  GA  PD A      +PA   P     GG  E  PAGA P A A
Sbjct: 319 EPAGAAAPDAAAAAPEAAPAEAAPAAEGAGGGAE--PAGAAPDAAA 362


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 285 NVAPR*ALWATALGRAPAGYTSC-APPRTPPTGSPA 389
           N  P+  L+ +A G AP GYT C +P + PP   P+
Sbjct: 198 NHDPKIHLYRSA-GTAPGGYTQCPSPYKQPPPQPPS 232


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 285 NVAPR*ALWATALGRAPAGYTSC-APPRTPPTGSPA 389
           N  P+  L+ +A G AP GYT C +P + PP   P+
Sbjct: 198 NHDPKIHLYRSA-GTAPGGYTQCPSPYKQPPPQPPS 232


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 397 SPAAGEPVGGVLGGAQEVYPAGARP-SAVAHNAYLGA 290
           S A   P+GG  GGAQ  Y AGA P    A   Y GA
Sbjct: 91  SYAGAGPIGGGFGGAQGGY-AGAGPIGGGAQGGYAGA 126


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 397 SPAAGEPVGGVLGGAQEVYPAGARPS 320
           +PA+  P GG+ G A    PA A P+
Sbjct: 452 TPASTAPTGGLFGAATTTAPAAAAPT 477


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 324 GRAPAGYTSCA-PPR-TPPTGSPAAGLSMR 407
           G  P G      PPR +PPTGSP  GL  R
Sbjct: 414 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSR 443



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 354 APPRTPPTGSPAAG 395
           AP R+PPTGSP  G
Sbjct: 339 APERSPPTGSPPTG 352


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 324 GRAPAGYTSCA-PPR-TPPTGSPAAGLSMR 407
           G  P G      PPR +PPTGSP  GL  R
Sbjct: 435 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSR 464



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 354 APPRTPPTGSPAAG 395
           AP R+PPTGSP  G
Sbjct: 360 APERSPPTGSPPTG 373


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 324 GRAPAGYTSCA-PPR-TPPTGSPAAGLSMR 407
           G  P G      PPR +PPTGSP  GL  R
Sbjct: 420 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSR 449



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 354 APPRTPPTGSPAAG 395
           AP R+PPTGSP  G
Sbjct: 345 APERSPPTGSPPTG 358


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
 Frame = +3

Query: 3   TRPARASATSTPSCDSRRLTLTS----WTSYTRTPEYTGSGTP*VTWTFFRTADPSNRTV 170
           T+P   +  +T   D  R T T+    + +++     T S TP  T + F    P++ T 
Sbjct: 175 TKPTTTTEDTTTEDDIIRFTTTTERVRYATFSPNIPMTTSTTPTTTTSTF----PTSTT- 229

Query: 171 CCRRAATAEPGSITQSPWSTTKLSSQC-LVRTGTPLGRINVAPR*ALWAT 317
              ++ TA+P S T  P +T+  ++Q   +   T   +I   P+  +W T
Sbjct: 230 --EKSTTAQP-STTTKPTTTSPPTTQVKTILPATEAQKIFTKPQYQIWPT 276


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 312  ATALGRAPAGYTSCAPPRTPPTGSPA 389
            A  +GRAP G++    P  PP  +P+
Sbjct: 944  AFGIGRAPPGFSEPLGPTLPPAAAPS 969


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,871
Number of Sequences: 27780
Number of extensions: 256943
Number of successful extensions: 904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)