Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32455
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   10.0 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   10.0 

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 139 KKVHVTYGVP 110
           K+VHV YG+P
Sbjct: 57  KEVHVFYGIP 66


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 139 KKVHVTYGVP 110
           K+VHV YG+P
Sbjct: 57  KEVHVFYGIP 66


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 263 WDAFRKNQCGAEISIMGYGTRPSA 334
           +DA+  N+   E  I  +G  PSA
Sbjct: 429 YDAYYGNRFSGEYEIPAHGLPPSA 452


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 424 DDALVVLIDSPAAGEPV 374
           DD+ VV IDSP  G  +
Sbjct: 624 DDSNVVQIDSPVWGRHI 640


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 424 DDALVVLIDSPAAGEPV 374
           DD+ VV IDSP  G  +
Sbjct: 624 DDSNVVQIDSPVWGRHI 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,678
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)