Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32454
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.46 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.46 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   0.81 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   10.0 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +1

Query: 343 VQLSLPWRLCG-PW 381
           +++ LPWR CG PW
Sbjct: 130 LRIDLPWRTCGNPW 143



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +3

Query: 360 LETMWTVASSPWKQYACSSPT 422
           ++  W    +PW    C +PT
Sbjct: 132 IDLPWRTCGNPWNTRYCLTPT 152


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +1

Query: 343 VQLSLPWRLCG-PW 381
           +++ LPWR CG PW
Sbjct: 183 LRIDLPWRTCGNPW 196



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +3

Query: 360 LETMWTVASSPWKQYACSSPT 422
           ++  W    +PW    C +PT
Sbjct: 185 IDLPWRTCGNPWNTRYCLTPT 205


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 134 FLLRYRCLTHLCLCLPSDILYVYEIW-LNRI 45
           +LL  +CLT +CL   S I+    +W +N+I
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILLWFINKI 411


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 452 KERNSRDI*SCRRGAGILFPRTACHGPHSLQG 357
           KE+ SR+    RR    L  +T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 360 LETMWTVASSPWKQYACSS 416
           L+  W+V +  W   +CSS
Sbjct: 403 LDADWSVNAGMWMWLSCSS 421


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 190 YFRQLNIHTRLL 155
           YF++ N++TR+L
Sbjct: 474 YFKEANLNTRML 485


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 190 YFRQLNIHTRLL 155
           YF++ N++TR+L
Sbjct: 474 YFKEANLNTRML 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,839
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)