Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32449
(376 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 121 4e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 75 5e-15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 3e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 38 5e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 37 9e-04
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 33 0.019
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 30 0.14
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.42
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 5.1
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.1
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 24 6.8
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.8
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 24 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 121 bits (291), Expect = 4e-29
Identities = 61/76 (80%), Positives = 65/76 (85%)
Frame = +1
Query: 115 RGVTRSPPPSEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITXGNER 294
RG T S +EREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVIT GNER
Sbjct: 196 RGYTFSTT-AEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNER 254
Query: 295 XRCPEALFQPSFLGME 342
R PEALFQPS LG+E
Sbjct: 255 FRAPEALFQPSALGLE 270
Score = 50.8 bits (116), Expect = 7e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3
Query: 51 AILRLDLAGRDLTXYXXKILTERGYSFTTT 140
AI+RLDLAGRDLT Y KIL ERGY+F+TT
Sbjct: 174 AIMRLDLAGRDLTDYLMKILMERGYTFSTT 203
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 74.5 bits (175), Expect = 5e-15
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +1
Query: 151 EIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITXGNERXRCPEALFQPSF 330
E VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI G+ER CPE LFQP
Sbjct: 207 ETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHL 266
Query: 331 LGME 342
+G E
Sbjct: 267 VGSE 270
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 36 VIRHEAILRLDLAGRDLTXYXXKILTERGYSFTTT 140
V+ + + RLD+AGRD T Y +L +GY+F T
Sbjct: 169 VVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRT 203
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 68.5 bits (160), Expect = 3e-13
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = +1
Query: 142 SEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITXGNERXRCPEALFQ 321
+E+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT G E PE LF
Sbjct: 209 AEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFN 268
Query: 322 PSFLGME 342
P +G E
Sbjct: 269 PEMMGSE 275
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 37.9 bits (84), Expect = 5e-04
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 145 EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITXGNERXRCPEALFQP 324
+R ++ + KE + V + A AS+ K +E PDG G ER R E LF P
Sbjct: 249 KRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNP 305
Query: 325 SF 330
SF
Sbjct: 306 SF 307
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.1 bits (82), Expect = 9e-04
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 20/81 (24%)
Frame = +1
Query: 145 EREIVRDIKEKLCYVALDFEQEMATA--AASTSLEKSYELPD------------------ 264
E IV +IKE +CYV+ +F+++M + LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 265 GQVITXGNERXRCPEALFQPS 327
QV+ NER PE LF PS
Sbjct: 271 QQVLNLSNERFMIPELLFSPS 291
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 32.7 bits (71), Expect = 0.019
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +1
Query: 112 PRGVTRSPPPSEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITXGNE 291
PR T S + + V D ++ C + D + ++ +T E +E PDG + G E
Sbjct: 222 PRDTTDSYHQFQVQRVYDEWKEECALISD----VPFSSETTIAESEFEFPDGSRMMFGAE 277
Query: 292 RXRCPEALFQP 324
R + PE LF P
Sbjct: 278 RYQIPEHLFVP 288
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 29.9 bits (64), Expect = 0.14
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +1
Query: 127 RSPPPSEREIVRDIKEKLCYVALDFEQEMA--TAAASTSLEKSYELPDGQ--VITXGNER 294
R+ P S + IKE+ CYV D +E + L+ + E G I G ER
Sbjct: 227 RNEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFER 286
Query: 295 XRCPEALFQPSFLGMEIV 348
PE F P + +
Sbjct: 287 FLAPEIFFNPEIASSDFL 304
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.42
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 103 RSSPRGVTRSPPPSEREIVRDIKEKL 180
R S G +RSPPPS VR I+++L
Sbjct: 91 RYSSVGRSRSPPPSRERSVRSIEQEL 116
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 5.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 43 GTRPSSVWTWLVA 81
G PS+VW WL+A
Sbjct: 91 GGAPSAVWCWLIA 103
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 5.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 166 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 273
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 24.2 bits (50), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 289 ERXRCPEALFQPSFLGME 342
E+ R PE +F PS +G++
Sbjct: 594 EQIRVPEVIFSPSIVGID 611
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.2 bits (50), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 181 CYVALDFEQEMATAAASTSLEKSYELPDGQVI 276
CYV+ +E + + SL SY +PD + I
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENI 70
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 211 MATAAASTSLEKSYELPDG 267
M+T +TS+ SY+LP G
Sbjct: 444 MSTTPLATSVNNSYKLPSG 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,406
Number of Sequences: 5004
Number of extensions: 19800
Number of successful extensions: 50
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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