Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32449
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              89   2e-20
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   0.51 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.51 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.51 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   4.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 88.6 bits (210), Expect = 2e-20
 Identities = 41/45 (91%), Positives = 43/45 (95%)
 Frame = +1

Query: 208 EMATAAASTSLEKSYELPDGQVITXGNERXRCPEALFQPSFLGME 342
           EMATAA+S+SLEKSYELPDGQVIT GNER RCPEALFQPSFLGME
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 45


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 186 IAELLLDVTNDFPLRRWW 133
           ++E+L+D T DF  R++W
Sbjct: 50  VSEVLMDFTLDFYFRQFW 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 41  SARGHPPSGLGWSRLDRXPXED 106
           +A G PP  + WS  D  P  D
Sbjct: 53  TATGSPPLNIDWSTADGHPVND 74


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 41  SARGHPPSGLGWSRLDRXPXED 106
           +A G PP  + WS  D  P  D
Sbjct: 53  TATGSPPLNIDWSTADGHPVND 74


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 309 GSLPAFLPGYGNRAAST 359
           G+  + +PG+G+ AAS+
Sbjct: 113 GATSSMVPGFGSTAASS 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,175
Number of Sequences: 438
Number of extensions: 1398
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)