Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32447
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 28 0.72
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 3.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 3.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 6.7
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 25 6.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 6.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 6.7
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.9
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.9
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 28.3 bits (60), Expect = 0.72
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 26 TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANL 205
T + A +++ Q N YS + T K +++ NG + I PT KP+ +
Sbjct: 558 TIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMM 617
Query: 206 ANSAVLRMLEEEERNRKGYS 265
A+ A R+L E+ R Y+
Sbjct: 618 AHKA--RILPGEKTIRMHYA 635
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 LKNLDNGSVGIDFNNPTTDKPA-NLANSAVLRMLEEEERNR 253
+K L+ ++ DFN+P++D + + A+L+M++ NR
Sbjct: 224 IKKLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENR 264
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 274 SGVASSTRNERIS*STTAESRVRQQRATLPVCSASLSKATSISTRAPISSSAS 432
S SS+ + ++ S+ + S + ++ S+SLS ++S ST + SSS+S
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271
Score = 25.4 bits (53), Expect = 5.1
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 259 IQSEESGVASSTRNERIS*STTAESRVRQQRATLPVCSASLSKATSISTRAPISSSASXX 438
I S S +SS+ + S S ++ S ++ S++L+ ++S S+R SSS S
Sbjct: 343 ISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSS 402
Query: 439 XXXXXXXXXXXXSVSPVSA 495
S +PVS+
Sbjct: 403 LSSHKSSSSSKSSSAPVSS 421
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +2
Query: 107 NIKETLNKHLKNLDNG-SVGIDFNNPTTDKPANLANSAVLRMLEEEERNRKGYSQKKVVW 283
N TLN + ++ +G S NP+T +P+ NS LR L+ + Y
Sbjct: 355 NSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQA 414
Query: 284 PPVPETNGYHNPQQQSPVYDNNAQ 355
PP Y + + + + Q
Sbjct: 415 PPPHPLRNYTSDAESISMRSKSTQ 438
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 107 NIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLRMLEEEERNRK 256
+I +TL D S ++NNP+T K ++ S ++EE+ +K
Sbjct: 373 SIGDTLQNDFTIYDYDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKK 422
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 14 HKR*TNDLEMATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDK 193
H + D ++ + PKI H++F +++ +T ++LK L N N+ T+
Sbjct: 60 HSNPSKDNQLISPPKINHREF------LNEEKESDTQTRYLKQLINICNSPSKNHETSLS 113
Query: 194 PANLANSAVLRMLEEEERNRK 256
P+ R L+ E N K
Sbjct: 114 PSKSTIDNNERKLDNEIDNYK 134
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 3.8
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +1
Query: 43 GHRPEDSTQAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPDNG*AS*LS*FRRP 222
GHR + L+ V L Y + QT R + +RL +P N S +S P
Sbjct: 472 GHRRSSTADNGTLSSNVPLYPAYNSSPVQT----RTSLFSSRLSKPSNPIVSSVSQANAP 527
Query: 223 KNVRRGRA*PQRIQSEESGVASS 291
KN P + + S ++ +
Sbjct: 528 KNALHSMPSPTSLANLPSNLSDT 550
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 16 QALNERPRDGHRPEDSTQAVQLAHRVV---LATEYQGNAQQTPEKPRQRICRNRLQQPDN 186
+ +++ + R EDS ++ + ++ LA Q N ++TP KP Q N +++ ++
Sbjct: 269 KTISQGNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSVKEGES 328
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 206 ANSAVLRMLEEEERNRKGYSQKKVVWPP 289
A SAV+ LE + + R G+S KK+ P
Sbjct: 273 ARSAVMAFLEMDIKKRLGHSSKKLQTHP 300
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 288 QYPKRTDIIIHNSRVPCTTTTRNTPRLLSLPIKSNL--NI-NPSPNIKL 425
Q P+RT +N V T R +L++P+ L I N PN+K+
Sbjct: 324 QQPQRTAAPPNNPNVNATNNNRINIEMLNIPVPKQLFDQIPNLPPNVKI 372
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.7
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 265 SEESGVASSTRNERIS*STTAESRVRQQRATLPVCSASLSKATSISTRAPISSSASXXXX 444
S S +SS+ + S S+++ S V +T S+S S ++S S+ + SSS+S
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
Query: 445 XXXXXXXXXXSVSPVSA 495
+V+P S+
Sbjct: 244 MSSSTFISTVTVTPSSS 260
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 44 ATGPKIVHKQFNSPIGLYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSA 217
+TG ++ F+ Y Q+N L N+ G+ IDF + + P++L S+
Sbjct: 115 STGNGLLRSSFDHD---YRQKNSPRNSIHRLSNISIGNNPIDFESSQQNNPSSLNTSS 169
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 67 QAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQ 177
Q +LA + A + Q AQQ E RQR+ + QQ
Sbjct: 345 QQAELAAQQAAAQQAQLAAQQAAEMERQRMAAQQHQQ 381
>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 70 AVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQ 177
++ H ++LA Y + P+KPR RIC + + Q
Sbjct: 61 SIDYVHSLILA--YPNDFFWRPKKPRVRICNSWMCQ 94
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 251 RKGYSQKKVVWPPVPETNGYHNPQQQSPVYDNNAQ 355
R+ + +K PP+P+ NG N + S Y +N++
Sbjct: 19 RRRFDEKPDSLPPLPDANGMSNGYRDS--YKSNSR 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,116
Number of Sequences: 5004
Number of extensions: 31768
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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