Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32447
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 33 0.18
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 30 1.3
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 28 5.1
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 27 6.8
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 8.9
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 27 8.9
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 27 8.9
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 27 8.9
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 68 KQFNSPIG-LYSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLAN 211
+ FN+ G + +QQ T HL+ + G+VG++ NNP P N
Sbjct: 1243 QHFNNSSGPVENQQQCTPTALDHLEEAEQGNVGVNLNNPADGVPDGQLN 1291
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 43 GHRPEDST----QAVQLAHRVVLATEYQGNAQQTPEKPRQRICRNRLQQPD 183
G RP D T +AVQ++ R+ +Y G ++ P+ R+C L+Q +
Sbjct: 356 GARPADVTFDGRKAVQISKRLTKQGDYFGVTEEGKPSPKDRLCIEILEQAE 406
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 161 GIDFNNPTTDKPA--NLANSAVLRMLEEEERNRKGYSQKKVVW 283
GID N +D+P + AN + + L+EEE N + S+ ++ W
Sbjct: 77 GIDKNGDDSDEPCAKDDANQSDMAALKEEEENWELDSEPELTW 119
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 95 YSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKPANLANSAVLR-MLEEEERNRKGYSQK 271
+S ++ L HLK+ +G NN P+ L+ SA R +L + G+
Sbjct: 196 FSVDHLAGILISHLKHTAEAHLGRHINNAVITLPSRLSYSADGRQVLSSAAKEYSGFRAV 255
Query: 272 KVVWPPVPETNGY-HNPQQ 325
KVV + Y H+ +Q
Sbjct: 256 KVVDEHIAAAAAYGHHTKQ 274
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 95 YSQQNIKETLNKHLKNLDNGSVGIDFNNPTTDKP---ANLANSAVLRMLEEEERNRKGYS 265
Y +I + L KH D SV F+ + +P + ++ L E + +
Sbjct: 724 YFFSSIGDDLLKHPSRTDFSSVRKCFDGASKARPIQSCEMTSNFALAWNSIMEEYQINFD 783
Query: 266 QKKVVWPPVPETN 304
K+V+PPVP N
Sbjct: 784 AFKIVYPPVPRQN 796
>05_04_0275 - 19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Frame = +2
Query: 86 IGLYSQQNIKETLN-KHLKNLDNGSVGIDFNNPTTDKPANLA------NSA-----VLRM 229
+ L NIK++L K + + N + ID ++ ANL NS V
Sbjct: 799 VSLVEGSNIKQSLQRKPISIVANSTTSIDGQTVVDNQSANLVKVLLDFNSEEYYKRVANS 858
Query: 230 LEEEERNR--KGYSQKKVVWPPVPETNG 307
L ++ER+ G+++++ +W PE G
Sbjct: 859 LGDKERSAVISGFAEQRAIWSNPPENGG 886
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +2
Query: 179 PTTDKPANLANSAVLRMLEEEERNRKGYSQKKVVWPPVPETNGYHNPQQQSPV 337
P T + L+ + ++ E N G K P +PE NG + + P+
Sbjct: 543 PKTQRARTLSVKYLEKLKRAENNNNNGSMSKSPRVPMIPENNGSMSKSPRVPI 595
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 191 KPANLANSAVLRMLEEEERN-RKGYSQKKVVWPPVPETNGYHNPQQQSP 334
KP++ N+ + RM N R G S++ V WPPV + + SP
Sbjct: 160 KPSS-GNNGLRRMGSGSSNNARIGSSRRPVAWPPVAVRSSASGSRPSSP 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,262,504
Number of Sequences: 37544
Number of extensions: 211238
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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