Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32446
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 188 2e-48
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 176 7e-45
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 1.5
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 1.5
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 1.5
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 1.5
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.5
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 4.6
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 4.6
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 8.0
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 188 bits (459), Expect = 2e-48
Identities = 92/139 (66%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
Frame = +3
Query: 102 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 281
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 282 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 458
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 459 TQLRTDF--DSGKELLCTV 509
Q+R + D G L+ V
Sbjct: 126 QQIRDAYEKDEGSVLVQVV 144
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 176 bits (429), Expect = 7e-45
Identities = 85/139 (61%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
Frame = +3
Query: 102 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 281
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 282 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 458
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 459 TQLR--TDFDSGKELLCTV 509
+R + D G L+ V
Sbjct: 160 NTIREALEKDEGSVLVQVV 178
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 100 SKTHTSRPETPGPQPPSPCNVRPCVKTV 183
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 100 SKTHTSRPETPGPQPPSPCNVRPCVKTV 183
S + T+ TPGP P +PC+ P V T+
Sbjct: 29 SASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 100 SKTHTSRPETPGPQPPSPCNVRPCVKTV 183
S + T+ TPGP P +PC+ P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 100 SKTHTSRPETPGPQPPSPCNVRPCVKTV 183
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 97 TSKTHTSRPETPGPQPPSPCNVRP 168
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 282 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 437
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 387 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 503
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 184 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 92
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.1 bits (57), Expect = 8.0
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -2
Query: 449 TIRDFEVLTQVTIVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 270
T D LTQV + H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194
Query: 269 QVNFSVAVLSGFGCGHFN 216
+V +V +G C N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 294 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 464
KK + H + P + E QL D +DG L +D+ DLR+D D D G
Sbjct: 45 KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103
Query: 465 L 467
L
Sbjct: 104 L 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,533
Number of Sequences: 27780
Number of extensions: 275053
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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