Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32435
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.81 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   10.0 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 316 KNIIFDLKNGM-MNSWQNNRFSSFVNQIQLIHYYDNRAMDV 435
           KN+     NG  + S QN  F+  +N +Q++H  DNR  ++
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNG-LNNLQILHLEDNRIREL 857


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 343 GMMNSWQNNRFSSFVNQIQLIHYYDN 420
           GM+  +   ++  F +++ L+H Y N
Sbjct: 512 GMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 343 GMMNSWQNNRFSSFVNQIQLIHYYDN 420
           GM+  +   ++  F +++ L+H Y N
Sbjct: 512 GMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 343 GMMNSWQNNRFSSFVNQIQLIHYYDN 420
           GM+  +   ++  F +++ L+H Y N
Sbjct: 138 GMVRIFLGPKYDEFGHEVDLVHNYMN 163


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 RLCSINMILFVNLIQLSPLLSVNNII 304
           R+C I   LF  +  ++ LLS  +II
Sbjct: 528 RMCLIIFTLFTIIATIAVLLSAPHII 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,805
Number of Sequences: 438
Number of extensions: 2407
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)