Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32434
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   0.72 
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   2.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   5.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   8.9  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   8.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.9  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 377 RCPVSFGPIIVDVQCDVAGRVDGTEDELFRLSGNQDQS*VDLISGYIFC 231
           + P SFGP    +QC V    D   DE+  + GN   + V  +S +I C
Sbjct: 222 KTPASFGPPKSLLQCMVDMVCDSINDEV--VDGNLQLNVVKALSAFILC 268


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 342 VYDNWPEADWATECVSRAEILRLIYQGRFLHSSV 443
           +YD+WP++   T+      +L + Y     H S+
Sbjct: 110 IYDSWPQSPQKTQLADILSVLGMSYSNTSKHESL 143


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 78  LSSCDDGQVIW*SEVFMSYAGL-SRLQ*DPF 167
           LSS D+G+ IW  + F ++ G+   +Q  PF
Sbjct: 46  LSSFDNGEKIWVEDAFTTFFGIPDVIQLSPF 76


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 169 EKGSHCNRESPAYDINTSLYQITWPSS 89
           E GS     + +Y++ TS  Q++WPS+
Sbjct: 741 EIGSSIAGTAGSYNVGTSNTQLSWPST 767


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   EYQWEIVLITTPNDGSLIVF 62
           +Y+WE + +   N G +I+F
Sbjct: 178 DYKWEYLFVDVANYGKIIIF 197


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 467 PRAHHGHAPSAARAPP 514
           P++H+G+AP +   PP
Sbjct: 100 PKSHNGYAPKSMNPPP 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,038
Number of Sequences: 5004
Number of extensions: 41304
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)