Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32424
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   190   1e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    91   1e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    89   4e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    84   1e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    71   1e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    57   2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    47   2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    46   3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    43   2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.95 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   1.7  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   5.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   6.7  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   6.7  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  190 bits (463), Expect = 1e-49
 Identities = 86/95 (90%), Positives = 92/95 (96%)
 Frame = -3

Query: 514 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVW 335
           SIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVW
Sbjct: 281 SIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVW 340

Query: 334 IGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 230
           IGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 341 IGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 41/95 (43%), Positives = 66/95 (69%)
 Frame = -3

Query: 514 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVW 335
           SI+  D+D+R  LY+N V+SGG+T+  G  +R   E+ A++    ++KI A PER ++ W
Sbjct: 286 SILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAW 345

Query: 334 IGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 230
           +GGSILASLSTF+++ I+ EEY ++   ++ R+ F
Sbjct: 346 LGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 6/99 (6%)
 Frame = -3

Query: 511 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYS 341
           I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+
Sbjct: 335 ISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYA 393

Query: 340 VWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 233
            W+GGSIL+SL TF Q+WIS++EY+E G     ++ ++C
Sbjct: 394 SWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
 Frame = -3

Query: 514 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYS 341
           SI+ CD ++R  L  N V++GGT++ PG+++R+Q E+  LA  S I +           +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390

Query: 340 VWIGGSILASLSTFQQMWISKEEYDESG 257
           VW GGSILASL  FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 12/98 (12%)
 Frame = -3

Query: 514 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKI 368
           +I   DVDIRK LY   V+SGG++MY G+  R++KEI  L         P+ +   K+KI
Sbjct: 281 TIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKI 340

Query: 367 IAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 257
              P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct: 341 EDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
 Frame = -3

Query: 511 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI--------------KI 374
           +    +D+RK LY N V+SGG+T++    +R+Q+++  +    I               +
Sbjct: 315 VQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV 374

Query: 373 KIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 239
            +I+   ++ +VW GGS+LA    F     +K +Y+E G  I  R
Sbjct: 375 NVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = -3

Query: 511 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 332
           + +  ++ ++ L +N +++GG    PG+  R+++E+T++ P    I +          W 
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682

Query: 331 GGSILASLSTFQQMWISKEEYDESGP 254
           G S  +    F+   +++EEY E GP
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGP 708


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 42/86 (48%)
 Frame = -3

Query: 493 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 314
           +I+  L  N V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S + 
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372

Query: 313 SLSTFQQMWISKEEYDESGPGIVHRK 236
            L  +    I++ EY E G  I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = -3

Query: 484 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 314
           K+LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I  
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586

Query: 313 SLSTFQQMWISKEEYDESGPGIVHRK 236
            +    ++WI   ++   G  ++  K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 337 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 236
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 412 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 302
           KEI++ A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 ELGRAQHHTAPGSRGRAA*KHLRWT 248
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 386 DHQDQDHRSPREEVLRMDRWIHPG 315
           D  D+  R+  E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 183 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 16
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 345 YFLSGGAMILILMVEGARAVISFCILSAIPGY 440
           Y +SGGA +        +A +S CI   +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,701
Number of Sequences: 5004
Number of extensions: 32349
Number of successful extensions: 92
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)