Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32422
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   131   5e-32
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   5.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   6.7  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   8.9  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.9  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   8.9  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  131 bits (317), Expect = 5e-32
 Identities = 69/155 (44%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
 Frame = +2

Query: 56  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 235
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 236 VMKEAAFSLAEAKFTTG-DFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 409
           VM+ AAFS+AE  F  G + N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 410 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQT 514
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q+
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQS 155


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 309  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 425
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 311 NVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKK 463
           N+ K  + I SK        + +F ++QD  + Y +  LAR G+ L  + K
Sbjct: 145 NIEKEALCILSKHPGF----IKLFYTFQDAHNLYFVLSLARNGELLDYINK 191


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 175 KGISLLLEETMAFHCTSQAT 116
           K IS++ E  MAFHC S  T
Sbjct: 255 KHISVIHEGNMAFHCDSCGT 274


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 314 VTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYEL 418
           +TK  +   + KD + G  +P F+ Y+   D YEL
Sbjct: 103 ITKKSLHNVASKDYIRGSHVPCFQPYE---DVYEL 134


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 80  IFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMK--EAA 253
           I PS    +    + +    G  +L K++      F+MI+SK  ETK    EV+   EAA
Sbjct: 589 IMPSESKNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNRETKRYDFEVLSALEAA 648

Query: 254 FSLAEAK 274
             ++  +
Sbjct: 649 IIVSRIR 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,346
Number of Sequences: 5004
Number of extensions: 42120
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)