Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32418
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    31   0.10 
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   6.7  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   6.7  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   6.7  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   8.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -2

Query: 251  LKFILSSMELFYRNLWLRCLLVTNFKN*IKFIKQLLSDSYCPRVPNPKYIIYFLYEFRYT 72
            L F L+ +E+FY      CLL   F   +  I  LLSD Y     + K  +++   + Y 
Sbjct: 810  LTFELAFLEIFYE--LFNCLLHLQFSKYLVIIGTLLSDKYMTLGFSGKAHLFYTKCYSYL 867

Query: 71   NFTALS--ITFYDYVSLIKYLIL 9
                 S  I F++ VS  KYLIL
Sbjct: 868  RQCKSSPFINFWN-VSYGKYLIL 889


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
 Frame = -2

Query: 365 SFVNSFGMFKKYILTLTSVSLLHFFYNS*FIYWCTNLILKFILSSMELFYR--------- 213
           S   +FG+ K Y+  LT+  +   F    F+ W   L+   +  +M  F+          
Sbjct: 26  SLEKNFGVSKLYVF-LTAAGIYALFL---FLNWGGFLLTNLLAFAMPAFFSINAIETTNK 81

Query: 212 ---NLWLRCLLVTNFKN*IKFIKQLL 144
                WL   LVT+F N I++  QL+
Sbjct: 82  ADDTQWLTYYLVTSFLNVIEYWSQLI 107


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 336 KIYTNFNICKFITFFLQFII 277
           + +T+ N C +IT FL F+I
Sbjct: 189 RYWTDINSCAWITIFLVFVI 208


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 158 IKQLLSDSYCPRV 120
           ++QL+SD+YCP +
Sbjct: 40  LRQLISDTYCPHI 52


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 336 KIYTNFNICKFITFFLQFIIYLLVHQSHFEIHIIFNGIVLSKFMA 202
           K + +F++  FI FFL +   +L H      H+I    +   F++
Sbjct: 144 KSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLS 188


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 134 YCPRVPNPKYII--YFLYEFRYTNFTALSITFYDYVSLIK 21
           + PR PNP  II  Y  YE++Y N ++L  T Y + S  K
Sbjct: 42  HVPR-PNPNQIINLYPPYEYKYNNTSSL-CTKYIHTSANK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,771
Number of Sequences: 5004
Number of extensions: 39896
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)