Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32418
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    29   1.7  
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620...    27   8.9  

>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
            2643625-2643730,2643770-2644349,2645780-2645871,
            2645969-2646035,2646126-2646231,2646628-2646708,
            2646789-2647058,2647158-2648788,2648834-2649385,
            2650602-2651324,2651451-2651526
          Length = 1486

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 371  EGIVNRHNCEKSAIMLILDKFS*IITRELLCDYLHPDL 484
            E IV R +C+K  +++++DK   +  +   C + HP L
Sbjct: 1345 EAIVTRVDCKKDILLVLVDKSKLLNLKGKQCRFQHPPL 1382


>08_01_0701 +
           6200351-6200470,6200879-6201104,6201502-6201747,
           6201818-6201868,6202231-6202491,6202587-6202639,
           6202705-6202819,6202985-6203239,6203773-6204827
          Length = 793

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -1

Query: 315 ICKFITFFLQFIIYLLVHQSHFEIHIIFNGIVLSKFMAKMP 193
           I   +T FL   I LLV +SH+ + +IF  IVLS  M ++P
Sbjct: 448 IVMLVTTFLMVPIMLLVWKSHWILVVIF--IVLS-LMVELP 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,036
Number of Sequences: 37544
Number of extensions: 186899
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)