Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32409
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 100 1e-22
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 99 1e-22
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 30 0.100
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 1.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 3.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 24 5.0
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 24 5.0
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 23 8.7
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 23 8.7
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 23 8.7
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 99.5 bits (237), Expect = 1e-22
Identities = 44/78 (56%), Positives = 61/78 (78%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
P IGYG+NKKTR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A
Sbjct: 50 PKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKA 109
Query: 182 QQLSIRVTNAAARLRSQE 235
+ L ++VTNA A++RSQE
Sbjct: 110 RALGVKVTNAGAKVRSQE 127
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 99.1 bits (236), Expect = 1e-22
Identities = 44/78 (56%), Positives = 61/78 (78%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
P IGYG+NKKTR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A
Sbjct: 50 PKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKA 109
Query: 182 QQLSIRVTNAAARLRSQE 235
+ L ++VTNA A++RSQE
Sbjct: 110 RALGVKVTNAGAKVRSQE 127
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 29.9 bits (64), Expect = 0.100
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 238 VLLGAEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 116
VL ++ R+ HSD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 50 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 223
N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654
Query: 224 RSQENE 241
R + +
Sbjct: 655 RRESQK 660
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +2
Query: 122 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 208
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 5.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 103 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPLPG 234
D K+ R+ +E A K P + S C R+PP G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 5 NIGYGSNKKTRHMLPNGFRKVLVHNVKE 88
NIGYG+ K + + +K +H++ E
Sbjct: 536 NIGYGNPKASNDEIVEAAKKAKIHDIIE 563
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 1 AQHWLRFQQEDPSYAPKWIP*GPSS 75
A+ +LRFQQ+ + +W+ P S
Sbjct: 181 AKPFLRFQQKYQQFTHRWLEFAPQS 205
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 181 PAAQHQSDECGRSPPLPGERINIIVLXXXXXXNS 282
PA HQS + PP I I L NS
Sbjct: 112 PAVSHQSKNTSQDPPYVSTPIGDIALRVMPDDNS 145
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 91 GNLDDAKQEVLRRDRSRCLFE 153
GN DD KQE D+S +++
Sbjct: 170 GNNDDQKQEAYEVDKSNMMYK 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,829
Number of Sequences: 5004
Number of extensions: 22497
Number of successful extensions: 47
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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