Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32409
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 127 2e-30
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 127 2e-30
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 108 8e-25
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 68 1e-12
08_02_1238 + 25486263-25487574,25488210-25489117 28 1.4
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 3.3
03_05_0796 + 27787401-27788831 27 3.3
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 3.3
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 3.3
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 3.3
12_02_1193 + 26891619-26892456,26892545-26893884 26 7.6
10_07_0016 + 11826066-11826773 26 7.6
07_03_0808 - 21668100-21669092 26 7.6
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 26 7.6
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 127 bits (307), Expect = 2e-30
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
PNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA
Sbjct: 54 PNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERA 113
Query: 182 QQLSIRVTNAAARLRSQENE 241
QL I VTN ARLRSQE+E
Sbjct: 114 AQLDIVVTNKLARLRSQEDE 133
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 127 bits (307), Expect = 2e-30
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
PNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA
Sbjct: 121 PNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERA 180
Query: 182 QQLSIRVTNAAARLRSQENE 241
QL I VTN ARLRSQE+E
Sbjct: 181 AQLDIVVTNKLARLRSQEDE 200
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 108 bits (260), Expect = 8e-25
Identities = 50/68 (73%), Positives = 57/68 (83%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
PNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA
Sbjct: 54 PNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERA 113
Query: 182 QQLSIRVT 205
QL I ++
Sbjct: 114 AQLDIVIS 121
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 115
PNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 376 PNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 181 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 98
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 64 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 207
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 154 EAEADRGKSPAAQHQSDECGR 216
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 133 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPLP 231
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 249 YIYSFSWERRRAAAFVTLMLSCWALSTISFRFFEE 145
Y+++ ER A + +TLM++C++L + F +
Sbjct: 177 YLFNSQLERNIALSIITLMITCFSLVVVGGFLFHK 211
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +2
Query: 2 PNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL---EILMMQNRKYCAEIAH 139
P ++K+R + NGFRKV HN L ++L+ N KY A H
Sbjct: 270 PRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLH 321
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 25.8 bits (54), Expect = 7.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 43 APKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSP 222
APK PSS A + DDA++ +R EA AD+ A + ++D G +P
Sbjct: 349 APKKRRVPPSSDS-DADDEDDAEEHDGEEEREEEEEVEAVADKATGEAVEDRADTPGYTP 407
Query: 223 -PLPG 234
P PG
Sbjct: 408 TPGPG 412
>10_07_0016 + 11826066-11826773
Length = 235
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 64 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPLPG 234
G ++ C AG A+ E +D + EEA AD G+ AA + +PG
Sbjct: 59 GQTAAC-GAGRWAAARDEAAAQDEAAARDEEAGADGGRLHAATASTTAAAAVAGIPG 114
>07_03_0808 - 21668100-21669092
Length = 330
Score = 25.8 bits (54), Expect = 7.6
Identities = 21/74 (28%), Positives = 25/74 (33%)
Frame = +1
Query: 4 QHWLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSP 183
QH + PS AP+ P P S R + + R RS C A K
Sbjct: 149 QHQPALRHLPPSTAPRRTPPPPGSASPRPSSPESFSSATGARFRSTCFSTRYSAIPSKKE 208
Query: 184 AAQHQSDECGRSPP 225
A S R PP
Sbjct: 209 A--RSSSPASREPP 220
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 127 RDRSRCLFEEAEADRGKSPAAQHQSDEC 210
RDR R +A+AD GKSPAA C
Sbjct: 5 RDRGR----DADADLGKSPAANLAKSAC 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,947
Number of Sequences: 37544
Number of extensions: 181751
Number of successful extensions: 572
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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