Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32409
         (322 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   140   4e-34
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   140   4e-34
BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   140   4e-34
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   140   4e-34
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   140   4e-34
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   140   4e-34
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   140   4e-34
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...    88   3e-18
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    52   2e-07
AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA...    28   2.3  
X04132-3|CAA27749.1|  455|Drosophila melanogaster protein ( Dros...    27   5.4  
AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.      27   5.4  

>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 115 KQLSVRLTNPNGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 115 KQLSVRLTNPNGRLRSQENE 134


>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 68  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 127

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 128 KQLSVRLTNPNGRLRSQENE 147


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 115 KQLSVRLTNPNGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 115 KQLSVRLTNPNGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 115 KQLSVRLTNPNGRLRSQENE 134


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  140 bits (339), Expect = 4e-34
 Identities = 64/80 (80%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA
Sbjct: 68  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERA 127

Query: 182 QQLSIRVTNAAARLRSQENE 241
           +QLS+R+TN   RLRSQENE
Sbjct: 128 KQLSVRLTNPNGRLRSQENE 147


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNK+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA
Sbjct: 55  PNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERA 113

Query: 182 QQLSIR 199
           +QLS+R
Sbjct: 114 KQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 32/83 (38%), Positives = 43/83 (51%)
 Frame = +1

Query: 1   AQHWLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKS 180
           AQH LR +Q  P +A   I   P +Q  RAG    A+  +LRRDR R L +EA+ D    
Sbjct: 22  AQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDRPRRLLQEAQGDCRAR 81

Query: 181 PAAQHQSDECGRSPPLPGERINI 249
            AA     +  RSP    ER+++
Sbjct: 82  QAAVGPPHQPQRSPAFSRERVSL 104


>AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA
           protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 94  NLDDAKQEVLRRDRSRCL-FEEAEADRGKSPAAQHQS 201
           NL  ++   LRR RSRCL +      R  SP+ +H S
Sbjct: 132 NLSRSRSRTLRRSRSRCLGWSCWSLRRSPSPSRRHHS 168


>X04132-3|CAA27749.1|  455|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 455

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +2

Query: 23  NKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VERAQ 184
           N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++   
Sbjct: 31  NRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIKNKF 90

Query: 185 QLSIRV-TNAAARLRSQENE 241
            L I + T     LR   NE
Sbjct: 91  SLQIEIPTIVNTPLRINLNE 110


>AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +2

Query: 23  NKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VERAQ 184
           N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++   
Sbjct: 27  NRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIKNKF 86

Query: 185 QLSIRV-TNAAARLRSQENE 241
            L I + T     LR   NE
Sbjct: 87  SLQIEIPTIVNTPLRINLNE 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,989
Number of Sequences: 53049
Number of extensions: 290355
Number of successful extensions: 756
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 674007744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)