Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32409
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   152   9e-40
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.91 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  152 bits (369), Expect = 9e-40
 Identities = 73/80 (91%), Positives = 76/80 (95%)
 Frame = +2

Query: 2   PNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERA 181
           PNIGYGSNKKTRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERA
Sbjct: 55  PNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERA 114

Query: 182 QQLSIRVTNAAARLRSQENE 241
           QQLSIRVT A+ARLRSQENE
Sbjct: 115 QQLSIRVTYASARLRSQENE 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 17  GSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVER 178
           G   + +  +P+G+   +   + EL  L +  + +   + HG+    R LIV+R
Sbjct: 73  GQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVDR 123


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 118  LPVLHHQDFQLFNI 77
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 118  LPVLHHQDFQLFNI 77
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 256 IQLYLFVLLGAEASGRI 206
           +  +LFV+   ++SGRI
Sbjct: 17  VNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 256 IQLYLFVLLGAEASGRI 206
           +  +LFV+   ++SGRI
Sbjct: 17  VNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 256 IQLYLFVLLGAEASGRI 206
           +  +LFV+   ++SGRI
Sbjct: 17  VNSFLFVIAAQDSSGRI 33


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 140 GVSSKKRKLIVERAQQLSIR 199
           G   KK+K  +  AQ LSIR
Sbjct: 89  GAKQKKKKRSLMGAQGLSIR 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,612
Number of Sequences: 438
Number of extensions: 1665
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)