Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32404
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    28   5.1  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    27   8.9  

>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 PLEVTRIDTKKIKVTQARHPVNIVNITDDD 349
           P   T+   KK+K    +HP N V+IT+ +
Sbjct: 258 PASSTKKGKKKVKFVDKKHPENAVHITEKE 287


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 275  RIDTKKIKVTQARHPVNIVNITDDDFLYPVAPIAVYRY 388
            R  + ++   Q +HP+++VN   D  L   APIA   Y
Sbjct: 1527 RPKSNQLVAAQRQHPIDLVNSPTDKILSLQAPIAYDLY 1564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,359
Number of Sequences: 37544
Number of extensions: 137826
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)