Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32400
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.2
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 27 1.6
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 2.9
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 5.0
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 5.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.7
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 25 6.7
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 24 8.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 24 8.8
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 24 8.8
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 325 AVSGKLKSIKGVTFNVANKIYIKEG 399
++SG KS+KGV ++ K Y+ G
Sbjct: 365 SISGHTKSVKGVAWDPEGKFYLSAG 389
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 94 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 255
I++P+L+ +I K++A+ NEL S PL AE+ ++G D
Sbjct: 48 IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 112 SMDSKALSSAITKFSAKFCNELDKKKNVVS 201
S DSK+L + F++K C E+DKK +++
Sbjct: 10 SCDSKSLG--VDDFTSKRCREIDKKALLIT 37
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 100 NPVLSMDS--KALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEEL 273
NP +S+D KAL S + + N NV SSP L+ + TD + +E
Sbjct: 255 NPEISLDEPIKALPSTTSDAPSSLLNT-----NVSSSPSKFRKFLSSVIPAKTDLSAKES 309
Query: 274 LTS 282
LTS
Sbjct: 310 LTS 312
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 5.0
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +1
Query: 169 NELDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTS-----LGITDDDTIRSSFSAVS 333
+E+ + + + + L L+T P H+ LG+ D ++ S + +
Sbjct: 249 HEVQYQYRITDNKRNTAVLAKLLTAALDAPYHDSPRVRRQDYLLGLIDTRSMSESKGSGN 308
Query: 334 GKLKSIKGVTFNVANKIYIK 393
GKL+ +K ++ N A +I+ K
Sbjct: 309 GKLRKVKKISKN-AKRIFSK 327
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 281 LVNSSSCAGSVVPKVINASKYSADNGDD 198
L+ SS SV PK++NA Y+ DD
Sbjct: 1006 LLQISSKLSSVAPKILNAVLYNLVVSDD 1033
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 72 NTIYTIGNKEPCSQYGFKGFILCNHQVL 155
NTI T N++ + + KG L HQ+L
Sbjct: 117 NTILTPENRKRTASFSTKGVSLSQHQLL 144
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 DDTIR-SSFSAVSGKLKSIKGVTFNVANKIYIKE 396
DDT+ S S +S L S+K F V Y+K+
Sbjct: 72 DDTMSVSKASLLSNSLPSVKSKIFKVPRARYVKQ 105
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 24.2 bits (50), Expect = 8.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 244 GTTDPAHEELLTSLGITDDDTIRSSFSAVSGKLKSIKGVTFNVANKIYIKEGDYELDPXL 423
G+ AHEE+ + + +R+ + + K V N ++Y K+ E+D
Sbjct: 97 GSMAKAHEEVSQQI----NTELRNKIREYIDQTEQQKVVAANAIEELYQKKTALEIDLSE 152
Query: 424 KKDA 435
KKDA
Sbjct: 153 KKDA 156
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 24.2 bits (50), Expect = 8.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 173 NWIKRRMLYHRHCQQNTCWR 232
+W+ R +LYH + + WR
Sbjct: 124 DWVVRSLLYHPQLEYDYVWR 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,997
Number of Sequences: 5004
Number of extensions: 31647
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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