Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32400
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 31 0.54
11_02_0014 - 7352619-7352918,7353173-7353418 30 0.71
11_02_0012 - 7346282-7347136,7347234-7347593 30 0.94
02_04_0632 + 24614659-24615528,24615636-24616133 29 1.6
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 28 3.8
03_05_0294 + 22855503-22855946,22856346-22856399 27 5.0
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 27 5.0
01_07_0252 - 42296138-42296281,42296527-42296613,42297043-422971... 27 5.0
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 6.6
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 27 6.6
01_01_1152 + 9170628-9171899 27 6.6
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402... 27 8.7
01_05_0272 + 20280557-20281220,20281799-20281938,20282035-202821... 27 8.7
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 175 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRSS 318
+ KN+V SP S LAL+ G +ELL LG D + S
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEES 74
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 30.3 bits (65), Expect = 0.71
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 ALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITD-DD 303
A + + K A ++++ +N+V S +S LAL+ G ELL LG + DD
Sbjct: 13 AFALRLAKRLADNGDDVNNNRNLVFSLVSLYAALALVAAGGQGTTLHELLALLGASSLDD 72
Query: 304 TIRSSFSAVSGKLKSIKGV 360
S + AV K KS K +
Sbjct: 73 LAESVYRAVEPK-KSRKKI 90
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 178 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRSS 318
+ +NVV SP+S LAL+ G +EL+ LG D + S
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEES 74
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -3
Query: 299 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 198
++V P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 71 TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 278 VNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGF 99
V+ ++ A P V N S NG +SSS N + D + ++ T +
Sbjct: 7 VDCNNTANGFKPFVGNVEVISLSNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPY 66
Query: 98 FISNSVNSITV 66
+S+S N TV
Sbjct: 67 RLSDSANKFTV 77
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 190 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGI 291
NV SPLS L+L+ G ++L++ LG+
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGV 78
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 187 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLG 288
+NV SPLS L+L+ G ++L ++LG
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68
>01_07_0252 -
42296138-42296281,42296527-42296613,42297043-42297135,
42297267-42297341,42297480-42297575,42297987-42298133,
42298225-42298296,42298912-42298959,42299507-42299607,
42300226-42300337,42300506-42300590,42300693-42300848,
42300956-42301047,42301155-42301238,42301676-42301726,
42302227-42302295,42302417-42302476,42303305-42303535
Length = 600
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +1
Query: 154 SAKFCNELDKKKNVVSSPLSAEY-LLALITLGTTDPAHEELLTSLG----ITDDDTIRSS 318
++K+CN + K VVS ++E+ +A + +G T E L G D+D I
Sbjct: 500 NSKYCNVFTENKRVVSIISTSEFGKVAFVAIGATMVGSIEFLKEEGDYVHKGDEDAIEFD 559
Query: 319 FSAVSGKLKSIKGVTFNVANKIYIKEGDYELDP 417
++ +S++ + +V ++ + + +L P
Sbjct: 560 ADLLANSARSLETLV-SVGMRLGVSTRNRDLQP 591
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 187 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRSSFSAVSGK 339
KN+V SP +L+ G AHE +L TD T+ S S++ G+
Sbjct: 513 KNIVYSPKQHMFLVVFELSGPNGVAHEVVL-YWEQTDLQTVNSKGSSIKGR 562
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 27.1 bits (57), Expect = 6.6
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 88 LEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA- 261
+E+ LSM +K SSA+ F+ KF + L S+E + GT T PA
Sbjct: 238 VEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPAL 296
Query: 262 HEELLTSLG 288
H+ L++SLG
Sbjct: 297 HQFLVSSLG 305
>01_01_1152 + 9170628-9171899
Length = 423
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 187 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITD-DDTIRSSFSAVSGKLKSIKGVT 363
+N + SPLS LAL+ G ELL LG + RS + + +L+ + +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 364 F 366
F
Sbjct: 119 F 119
>11_08_0005 +
27536091-27536761,27539697-27539890,27540097-27540255,
27540385-27541493
Length = 710
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 326 AENDERIVSSSVIPRLVNSS-SCAGSVVPKVINASKY--SADNGD 201
A D +V +V+ + + SC+GSV P ++ Y +A NGD
Sbjct: 241 ANRDGEMVVPTVLDWAIRGNGSCSGSVAPACVSEHSYCANATNGD 285
>01_05_0272 +
20280557-20281220,20281799-20281938,20282035-20282124,
20282249-20282354,20282544-20282695,20282776-20282873,
20282948-20283086,20283223-20283321,20283411-20283575
Length = 550
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 217 EYLLALITLGTTDPAHEELLTSLGITDDDTIRSSFSAVSGKLKSIKGVTFNVANKIYIKE 396
E L+ + G + A E +L S + D DT+ + S K I + VAN +IK
Sbjct: 147 EKLIIHLPCGCSSTAPEGVL-SYAVQDGDTLGNIASLFRSSWKDILDLNPRVANPDFIKP 205
Query: 397 G 399
G
Sbjct: 206 G 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,713,693
Number of Sequences: 37544
Number of extensions: 174172
Number of successful extensions: 422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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