Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32396
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   147   1e-36
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   127   1e-30
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.3  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   2.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   2.9  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   6.7  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.7  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.9  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   8.9  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  147 bits (356), Expect = 1e-36
 Identities = 73/135 (54%), Positives = 95/135 (70%), Gaps = 7/135 (5%)
 Frame = +2

Query: 107 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 265
           +PK ++ I  VGSGNWG+AIAKI G NA A   +F  +V MWV+EE IE K    KLTE+
Sbjct: 18  RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77

Query: 266 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 445
            NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++G I+P A
Sbjct: 78  FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137

Query: 446 AALSLIXGFDIAEXG 490
             +S I G  +++ G
Sbjct: 138 VGISCIKGVAVSKEG 152


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  127 bits (306), Expect = 1e-30
 Identities = 66/126 (52%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
 Frame = +2

Query: 122 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 286
           V I+GSGNWG+AIAKI G NA +  + F  +V MW+YEE I  EGK+  LTE+ N THEN
Sbjct: 27  VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86

Query: 287 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIX 466
           VKYL G K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +K  A A+S I 
Sbjct: 87  VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146

Query: 467 GFDIAE 484
           G  + +
Sbjct: 147 GVSVTK 152


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 297 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 199
           RY TFS + L+   N FP  ISS+  ++T   K
Sbjct: 26  RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 261 SVNFFPSIISSYTHIVTLSSKFDR 190
           +++  PSIISSYT +  L++K  R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 224  VYEEIIEGKKLTEIINETHENVKYL 298
            + ++ +  +K  E++NETHE  K+L
Sbjct: 969  IQQKYLASEKTLEMMNETHEQFKHL 993


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 293 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVP 388
           Y+PG +    V AV D VEA  K  D ++++ P
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTP 91


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 116 NKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE--GKKLTEIINETHENV 289
           NK+ + GS   G+  A +  + AAS +NF   V   +   + +      T    E  EN 
Sbjct: 173 NKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENT 232

Query: 290 KYLPGHKL 313
             LP  K+
Sbjct: 233 PQLPAAKM 240


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 171 TIFAIAEPQFPDPTMQTLFFGCLSAISKILQSRTKYLN 58
           T FAI    F +P +       LS+ S  LQ+  +YLN
Sbjct: 513 TSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYLN 550


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 185 ASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENV 289
           ASL      V   V +E  E K L ++INE HE +
Sbjct: 37  ASLQRTVPLVESGVEKEEEEEKHLQQVINEAHEAI 71


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 392 QFVRTICSTLLGKIKPTAAALSLIXGFDIAE 484
           + +R IC T+ G ++ +   + L  GF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,041
Number of Sequences: 5004
Number of extensions: 30979
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)