Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32396
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22180-1|CAA80176.2| 371|Caenorhabditis elegans Hypothetical pr... 163 9e-41
Z22180-2|CAD54146.1| 392|Caenorhabditis elegans Hypothetical pr... 154 3e-38
Z22180-10|CAO82052.1| 360|Caenorhabditis elegans Hypothetical p... 151 4e-37
Z99171-3|CAB16310.1| 374|Caenorhabditis elegans Hypothetical pr... 109 1e-24
Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical pr... 97 7e-21
Z93394-4|CAD59168.1| 193|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z93394-3|CAD59167.1| 228|Caenorhabditis elegans Hypothetical pr... 27 8.0
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 27 8.0
AY494975-1|AAR87492.1| 486|Caenorhabditis elegans collagen/olfa... 27 8.0
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 27 8.0
AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin (col... 27 8.0
>Z22180-1|CAA80176.2| 371|Caenorhabditis elegans Hypothetical
protein K11H3.1a protein.
Length = 371
Score = 163 bits (395), Expect = 9e-41
Identities = 80/151 (52%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Frame = +2
Query: 59 FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEE 235
F+YF I M+ K KV I+GSGNWGSAIA+IVG S + F+ V MWV+EE
Sbjct: 9 FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 64
Query: 236 IIEGKKLTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICS 415
I+ G+KL+E+IN HEN+KYLPG LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC
Sbjct: 65 IVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICE 124
Query: 416 TLLGKIKPTAAALSLIXGFDIAEXGGIDLIS 508
L+GKI A+SLI G + GG+ LIS
Sbjct: 125 KLVGKIPADTQAISLIKGVSTEKRGGLKLIS 155
>Z22180-2|CAD54146.1| 392|Caenorhabditis elegans Hypothetical
protein K11H3.1b protein.
Length = 392
Score = 154 bits (374), Expect = 3e-38
Identities = 78/147 (53%), Positives = 101/147 (68%), Gaps = 3/147 (2%)
Frame = +2
Query: 59 FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEE 235
F+YF I M+ K KV I+GSGNWGSAIA+IVG S + F+ V MWV+EE
Sbjct: 21 FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 76
Query: 236 IIEGKKLTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICS 415
I+ G+KL+E+IN HEN+KYLPG LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC
Sbjct: 77 IVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICE 136
Query: 416 TLLGKIKPTAAALSLIXG--FDIAEXG 490
L+GKI A+SLI G FD G
Sbjct: 137 KLVGKIPADTQAISLIKGISFDKTNQG 163
>Z22180-10|CAO82052.1| 360|Caenorhabditis elegans Hypothetical
protein K11H3.1d protein.
Length = 360
Score = 151 bits (365), Expect = 4e-37
Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 3/130 (2%)
Frame = +2
Query: 110 PKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHEN 286
PK KV I+GSGNWGSAIA+IVG S + F+ V MWV+EEI+ G+KL+E+IN HEN
Sbjct: 3 PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHEN 61
Query: 287 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIX 466
+KYLPG LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC L+GKI A+SLI
Sbjct: 62 IKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKIPADTQAISLIK 121
Query: 467 G--FDIAEXG 490
G FD G
Sbjct: 122 GISFDKTNQG 131
>Z99171-3|CAB16310.1| 374|Caenorhabditis elegans Hypothetical
protein F47G4.3 protein.
Length = 374
Score = 109 bits (262), Expect = 1e-24
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Frame = +2
Query: 113 KNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGK---KLTEIINETH 280
+ K+ IVG GNWGSAIA +VG+ + F+ V++W + G + E IN TH
Sbjct: 21 RKKIAIVGGGNWGSAIACVVGKTVKAQDEVFQPIVSIWCRDSRKPGDLSPSIAETINSTH 80
Query: 281 ENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSL 460
EN KYLPG ++P NVVA ++EA + A +LI VVPHQ + IC L GK++ A A+SL
Sbjct: 81 ENPKYLPGRRIPDNVVATSSLLEACQSAHILILVVPHQGIPQICDELRGKLQKGAHAISL 140
Query: 461 IXGFDIA-EXGGIDL 502
G + E G I +
Sbjct: 141 TKGISSSCENGEIKM 155
>Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical
protein K11H3.1c protein.
Length = 304
Score = 97.1 bits (231), Expect = 7e-21
Identities = 45/73 (61%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Frame = +2
Query: 110 PKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHEN 286
PK KV I+GSGNWGSAIA+IVG S + F+ V MWV+EEI+ G+KL+E+IN HEN
Sbjct: 3 PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHEN 61
Query: 287 VKYLPGHKLPSNV 325
+KYLPG LP+NV
Sbjct: 62 IKYLPGKVLPNNV 74
>Z93394-4|CAD59168.1| 193|Caenorhabditis elegans Hypothetical
protein Y48E1C.4b protein.
Length = 193
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 243 SIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQF 142
++ S + +T++S++ LA +PT+ A P F
Sbjct: 2 NLASRVSGFLTMTSRYSSLATLKPTVAAALAPNF 35
>Z93394-3|CAD59167.1| 228|Caenorhabditis elegans Hypothetical
protein Y48E1C.4a protein.
Length = 228
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 243 SIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQF 142
++ S + +T++S++ LA +PT+ A P F
Sbjct: 2 NLASRVSGFLTMTSRYSSLATLKPTVAAALAPNF 35
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 148 GFCYCENCWSKCCES 192
G C+CE+CW ES
Sbjct: 146 GHCFCEHCWKSHVES 160
>AY494975-1|AAR87492.1| 486|Caenorhabditis elegans
collagen/olfactomedin domain containingprotein 2
protein.
Length = 486
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 187 RSISTNNFRNSRT-PVSRSNDANFVLWL 107
+S++ NFR+ R P+SR +A+ +LWL
Sbjct: 35 QSLTELNFRSKRDIPLSRGKNASDILWL 62
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 27.1 bits (57), Expect = 8.0
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 233 EIIEGKKLTE-IINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTI 409
EI+E +K ++ ++ + HE+ K + G+ + SN+ A K +L HQ +
Sbjct: 52 EILEREKNSQDMLKQLHEDKKEMEGN-IQSNI-------NAMKSENLQYQTQSHQEKKVF 103
Query: 410 CSTLLGKIKPTAAALSLIXGFDIAEXGGIDLISH 511
L K+K A LSL +I I+L+++
Sbjct: 104 AEKKLQKLKENGAKLSL----EIQSTSAIELVNY 133
>AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin
(collagen plus olfactomedin)family protein 2 protein.
Length = 486
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 187 RSISTNNFRNSRT-PVSRSNDANFVLWL 107
+S++ NFR+ R P+SR +A+ +LWL
Sbjct: 35 QSLTELNFRSKRDIPLSRGKNASDILWL 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,533,841
Number of Sequences: 27780
Number of extensions: 167589
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -