Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32393
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   5.1  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   6.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   8.9  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = -1

Query: 264 KTSSSAPFGLASSISVFRTFKSTSPLRQFPKVRNXXXXXXXXXXXXXXXXLRGHNRCNLT 85
           KT S+ PF   S++    T  +T P++      +                        LT
Sbjct: 561 KTGSNNPFAQFSNLPSQSTAPATKPMKPVRTGDDRFSNIAQAISTGNPMGTDSFGNIGLT 620

Query: 84  KVISQHTGSE 55
           +V +QHTGS+
Sbjct: 621 RVPTQHTGSK 630


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 287 AQLKGCIXSVLQGVRPCVGNDYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 451
           A++  C  +  + VR   G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 190 AEIVFCAIASNEQVRG-YGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 344 NDYANHINDAQNSTNQLIDFVCYKDGD 424
           ++Y N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
          reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 80 SSANTPAAKIVIKTVFH 30
          SS +TPA K+  KT+FH
Sbjct: 2  SSIDTPANKLQAKTLFH 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,804
Number of Sequences: 5004
Number of extensions: 32669
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)