Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32390
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 29 0.55
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.9
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 3.8
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 3.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 5.1
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 25 5.1
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 6.7
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 25 8.9
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 8.9
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 79 DDDMYISVQNLLKYVSDVTTASERDGILFAGY-VFKSAPQRFRSSKWRVSLEEY 237
DD + LK D ER ++ Y +FK A F R+++EEY
Sbjct: 816 DDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHVFTPEDLRLAVEEY 869
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 286 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 185
TP P P + P PP P + G AAP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 286 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 185
TP TP +T TPP +T STGT ++P
Sbjct: 299 TPVTPTVP-PTSTSSTSTPPPPASTSSTGTSSSP 331
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 286 TPRTPRPSRKAATCPRDTPPRTPATCSTGTVAAP 185
TP TP +T TPP +T STGT ++P
Sbjct: 353 TPVTPTVP-PTSTSSTSTPPPPASTSSTGTSSSP 385
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/44 (20%), Positives = 22/44 (50%)
Frame = +1
Query: 385 IVPTHCPHFHFYKKPYEREVYSDVIASHGYSNHDELIRVWNEQN 516
+VP+ FY P + Y ++ + G N+ ++ R + +++
Sbjct: 198 VVPSRLNPGKFYALPQSPQQYKQILMASGIGNYYQIARCFRDED 241
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 369 DYAEVNVIESEMLHEQASDVEHL 301
+Y +N+ ++ LH +A+DVE L
Sbjct: 171 EYGTINLTKNSQLHVRATDVERL 193
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 360 RHSREEDGHSADSLSAFPLLQEAVRARGL*RCDRLA 467
+HS E +GHS+D+ S F + + V L C + A
Sbjct: 1508 QHSYETNGHSSDTHSLFVINSQRVVGDILQYCSQFA 1543
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 441 LSLVRLLVEVEMRTMSRHY----AHLLRDYAEVNVIESEML 331
L ++ +V EM M++++ +HLL DY ++ ++E E +
Sbjct: 191 LDVIPSVVAQEMCNMTKYFELNNSHLLGDYVKLEMLEKERI 231
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/59 (23%), Positives = 21/59 (35%)
Frame = +1
Query: 100 VQNLLKYVSDVTTASERDGILFAGYVFKSAPQRFRSSKWRVSLEEYPWDKWPPYVTAGA 276
++NL K D+T GY+ + PQ+ + L P W V A
Sbjct: 616 IRNLAKTTEDLTPQQTHTFYEACGYMISAQPQKHLQERLIFDLMALPNQAWENIVAQAA 674
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 450 AINLSLVRLLVEVEM 406
A+ S+VRLL+EVEM
Sbjct: 207 AVRTSIVRLLIEVEM 221
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 271 RPSRKAATCPRDTPPRTP 218
RP+ A+T PR TP +P
Sbjct: 299 RPTNDASTSPRSTPSASP 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,961
Number of Sequences: 5004
Number of extensions: 32270
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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