Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32389
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 37 0.004
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 37 0.004
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 37 0.005
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 37 0.005
12_02_1282 + 27528159-27529148,27529549-27529614 36 0.007
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 36 0.007
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 36 0.007
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 36 0.007
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 36 0.009
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 36 0.012
11_01_0474 - 3666236-3668050 27 4.2
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 26 7.4
11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103... 26 9.8
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 26 9.8
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGP IVHRKC
Sbjct: 356 QMWISKDEYDESGPAIVHRKC 376
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGP IVHRKC
Sbjct: 356 QMWISKDEYDESGPAIVHRKC 376
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGP IVHRKC
Sbjct: 359 QMWISKAEYDESGPAIVHRKC 379
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGPGIVH KC
Sbjct: 355 QMWISKAEYDESGPGIVHMKC 375
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 350 PCPPSSRMWISKQGSHESGPGIVHRKC 270
P +MWI+K ESGP IVHRKC
Sbjct: 324 PSSMKIKMWIAKAEYDESGPSIVHRKC 350
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGP IVHRKC
Sbjct: 370 QMWISKGEYDESGPAIVHRKC 390
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGPGIVH KC
Sbjct: 355 QMWISKGEYDESGPGIVHMKC 375
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISK ESGP IVHRKC
Sbjct: 353 QMWISKGEYDESGPSIVHRKC 373
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 35.9 bits (79), Expect = 0.009
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWIS+ ESGP IVHRKC
Sbjct: 356 QMWISRAEYEESGPAIVHRKC 376
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 35.5 bits (78), Expect = 0.012
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWI+K ESGP IVHRKC
Sbjct: 356 QMWIAKAEYDESGPSIVHRKC 376
>11_01_0474 - 3666236-3668050
Length = 604
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 344 PPSSRMWISKQGSHESGPG 288
P SSRMW + SH+ G G
Sbjct: 80 PASSRMWYTSSPSHDEGGG 98
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 208 NATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLISFL 92
N ++ + LV+PE +LTP + FIV I L++ +
Sbjct: 310 NIPMADMELVLPEKKNPSLTPMDWVQFIVSVVIGLVTLV 348
>11_05_0035 -
18509505-18509615,18509840-18509950,18510318-18510377,
18510459-18510576,18510711-18510811,18510891-18510962,
18511069-18511156,18511423-18511557,18511655-18511767,
18511980-18512051,18512154-18512258,18512371-18512484,
18512587-18512681,18513539-18513686
Length = 480
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = -2
Query: 232 GVVLVRVLNATVSTLYLVIPEN*TSNLTPSILM*FIVKFYINLISFL 92
G+ + N ++ + LV+PE +LTP + F++ + L++ +
Sbjct: 272 GIFVKHFKNIPMADMELVLPEKKNPSLTPMDWVKFLISAVLGLVTLI 318
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 323 ISKQGSHESGPGIVHRKC 270
++K E+GP IVH+KC
Sbjct: 380 VTKGDYDETGPSIVHKKC 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,090,003
Number of Sequences: 37544
Number of extensions: 128750
Number of successful extensions: 244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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