Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32389
(353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 39 9e-04
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 39 9e-04
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 39 9e-04
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 39 9e-04
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 39 9e-04
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 39 9e-04
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 39 9e-04
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 39 9e-04
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 39 9e-04
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 39 9e-04
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 39 9e-04
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 29 1.2
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 354 QMWISKQEYDESGPSIVHRKC 374
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 354 QMWISKQEYDESGPSIVHRKC 374
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 311 QMWISKQEYDESGPSIVHRKC 331
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 341 QMWISKQEYDESGPSIVHRKC 361
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MWISKQ ESGP IVHRKC
Sbjct: 355 QMWISKQEYDESGPSIVHRKC 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 332 RMWISKQGSHESGPGIVHRKC 270
+MW+SK ESG IV +KC
Sbjct: 415 QMWVSKAEYDESGKSIVEKKC 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,762,829
Number of Sequences: 27780
Number of extensions: 108175
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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