Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32388
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 211 5e-56
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 27 2.2
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 3.8
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 25 5.1
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce... 25 6.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 6.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 6.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 6.7
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 8.9
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 8.9
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 8.9
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 8.9
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 8.9
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 211 bits (515), Expect = 5e-56
Identities = 99/160 (61%), Positives = 123/160 (76%)
Frame = +2
Query: 5 EFGTRVRLSGEDVERGTFSHRHHVLHHQKVDKATYCALAHLYPDQAPYTVCNSSLSEYGV 184
E G VR+SG+DVERGTFS RH VLH Q + Y L HL P+QA + + NSSLSEYGV
Sbjct: 659 EEGHHVRVSGQDVERGTFSQRHAVLHDQSSENV-YIPLNHLSPNQASFVIRNSSLSEYGV 717
Query: 185 LGFEVGYSVTNPNALVLWEAQFGDFNNVAQCIIDQFISSGQAKWVRQSGIVLLQPHGMEG 364
LGFE GYS+++PNALV+WEAQFGDF N AQCIIDQFI++G+ KW++++GIVL PHG +G
Sbjct: 718 LGFEYGYSLSSPNALVVWEAQFGDFANNAQCIIDQFIAAGETKWLQRTGIVLSLPHGYDG 777
Query: 365 MGPEHSSARLERFLQMCSDDPDYMPPESPDYEVRQLHDCN 484
GPEHSSAR+ER+LQ+C++DP P E + RQ DCN
Sbjct: 778 QGPEHSSARMERYLQLCNEDPREFPSE--EKLQRQHQDCN 815
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 361 LHAVRLQQYNPGLAHPLGLSAGDELVDDALG 269
L+A L+ +NPG AHP G EL +D LG
Sbjct: 179 LNAALLRYFNPGGAHPSG-----ELGEDPLG 204
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 493 YDPVAVVKLTHFIVGAFRGHVVRVVGAH--LQEPLQTSRGVLGAH 365
YDP+ + + + G VRVV +H L L T +G+H
Sbjct: 213 YDPLLAGRASEMMSQFMNGQPVRVVSSHPRLSGLLDTINAAIGSH 257
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 54 VPRSTSSPERRTLVPNSA 1
+P STSS E+ T +PNS+
Sbjct: 85 IPPSTSSVEKSTTIPNSS 102
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 253 RLQQRGPVHHRPVHLQRTGQVGA 321
R+QQ GPV RP+ G GA
Sbjct: 381 RIQQEGPVEQRPLCPTLIGSAGA 403
>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 178
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 14 TRVRLSGEDVERGTFSHRHH 73
+++ +S ED+E S+RHH
Sbjct: 18 SKIEVSAEDLEAAKVSYRHH 37
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 473 EADALHSRGFPGACSPGRRSTSARTSPNEPRSARGPSP 360
E++A +RG P T A T +P+ RGP+P
Sbjct: 1018 ESEARPTRGRPKRNIASVDETPALTLNGKPKKKRGPAP 1055
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 446 FPGACSPGRRSTSARTSPNEPRSARGPS-PPCREAAAVQSRTGAPTWP 306
F A SPG TS SP+ P + P+ P + + S + +PT P
Sbjct: 1543 FSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 80 HHQKVDKATYCALAHLYPDQAPY 148
+HQ DK T C A L ++ PY
Sbjct: 514 YHQASDKCTVCTPASLSKNKKPY 536
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 138 WSGYRCAKAQ*VALSTFWWWS 76
WSG + V S F+WWS
Sbjct: 200 WSGVSVTLWRDVPFSAFYWWS 220
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 413 TSARTSPNEPRSARGPSPPCREAAAVQS 330
T ++P + G +PP EAA ++S
Sbjct: 471 TKKEVETSKPPAVSGSTPPVNEAAVIES 498
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 151 SVGSLVGVQMCQGAVSGLVDLLVVEHVMSVRECASLNI 38
SVG VGV + G +DL+VV++ + SLN+
Sbjct: 301 SVGREVGVTTGRKRRCGWLDLVVVKYSTMINGYTSLNL 338
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +2
Query: 62 HRHHVLHHQKVDKATYCALAHLYPDQAPYTVCNSSLSEYGVLGFEVGYSVTNPNALVLWE 241
+R HV+ +++D A +L H Y + + E V+ + VGY++ + + W+
Sbjct: 248 NRFHVIS-KRIDIAELNSLIHDKSSNKLYMKTSFTTYEVAVVYYRVGYALDDYPSQEAWD 306
Query: 242 AQFGDFNNVA 271
+ N +A
Sbjct: 307 MRLTIENTLA 316
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 220 ERPGAVGGPVRRLQ-QRGPVHHRPVHLQR 303
E G + P +R+ ++ P+ H+PVH+Q+
Sbjct: 48 ESRGKIETPRKRIVFEKKPLLHKPVHIQK 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,636
Number of Sequences: 5004
Number of extensions: 49267
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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