Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32388
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.1  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   1.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 443 PGACSPGRRSTSARTSPNEPRSARGPSPP 357
           PG+ + G  S    TSP+    A  P PP
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQNKAVAPYPP 99


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 443 PGACSPGRRSTSARTSPNEPRSARGPSPP 357
           PG+ + G  S    TSP+    A  P PP
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQNKAVAPYPP 99


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 201 PTSKPRTPYSDSELL 157
           P  KPRTP++  +LL
Sbjct: 8   PNRKPRTPFTTQQLL 22


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 104 WPCRPSGGGARDV 66
           WP RPSG   +D+
Sbjct: 284 WPFRPSGTVLKDI 296


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 106 LLRLGTSVPRPGSLHCVQQLTV*VWCPGFRGRL 204
           +L  GT+  +  ++H    L    W P  RG +
Sbjct: 452 ILESGTTTLQTRTMHPYDHLVWNSWMPSIRGAI 484


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 416 STSARTSPNEPRSARGPSPP 357
           +T+  T+PN  ++A   +PP
Sbjct: 671 TTTTTTTPNTTQNASATTPP 690


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 455 SRGFPGACSPGRRSTSARTSPNEPRSARGPSP 360
           S G PG      +S  A    + P  ++GP P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,941
Number of Sequences: 438
Number of extensions: 3997
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)